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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaggagctatactgttatgtgtattaaggggaattttaaagctagtcttatgtccactgttctgaaaagaaatctgtaacagttgaacttaacagatattatttactctgtctgactcatttgagatgagttctcaattctttgtggaggttctgaagataaattttcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG

Basic information

species Glycine max
transcript GLYMA08G24000.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os02g11050.1 (Oryza sativa), 3'ss of exon 6
gtaaaggagctatactgttatgtgtattaaggggaattttaaagctagtcttatgtccactgttctgaaaagaaatctgtaacagttgaacttaacagatattatttactctgtctgactcatttgagatgagttctcaattctttgtggaggttctgaagataaattttcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG
                                                                             |||  || |    |||  || || |||| |   | |  | |   |   | || |       | ||  |||||         | | ||||| ||| || | ||||| ||||||| |||||| |||| || ||| ||||||| ||||| || || ||||| || || ||| |||| ||||||||||| || |||||||| || 
----------------------------------------------------------------------------gtgtgccact---gctttgcatatgttatatgtgccgattaat--aaccgtgaagg------agtttattgtgac-------acgttaaatgttccat-gcagGTTCTGATGGCAACAAATAGGATAGACATCTTGGATCAGGCCCTTCTGAGGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G107362_T04 (Zea mays), 3'ss of exon 6
gtaaaggagctatactgttatgtgtattaaggggaattttaaagctagtcttatgtccactgttctgaaaagaaatctgtaacagttgaacttaacagatattatttactctgtctgactcatttgagatgagttctcaattctttgtggaggttctgaagat--aaattttcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG
                                                                                                | | || | ||   ||        |        ||| || | |||    | |    ||| ||| | |   ||| || ||| | ||||||||||||| || ||  | || || ||  ||||||||||||| || || ||||| || || ||| ||||||||||||||||||| ||||| || || 
----------------------------------------------------------------------------------------------gtacacatcacttgtgctcctgtgtgctggattagtgatttgtaaatg---tataacagttatgatgttttgaatatttaat-gcagGTTTTGATGGCAACGAACAGAATAGACATTTTGGATCAAGCCCTTCTGAGGCCTGGCCGCATAGACAGGAAGATTGAATTTCCAAATCCTAACGAGGAT

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 6
lower sequence: AT5G19990.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaaaggagctatactgttatgtgtattaaggggaattttaaagctagtcttatgtccactgttctgaaaagaaatctgtaacagttgaacttaacagatattatttactct-gtctgactcatttgagatgagttctcaattctttgtggaggttctgaagataaattttcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG
                                                 | ||| |    |||   | ||| ||| |  ||  |||||||    |    | |   ||| | | ||||||      ||| | ||||  |  ||||| | |   |  |                  ||| ||||||||||||| |||||||| |||||||| ||||||||||| || || || |||||| | |||||  |||| ||||||||||| || ||||||||||||
----------------------------------------------gtacctat-taagttgtaaaggaaaaaaaaccata--agttgaataggatgagtctgtgttattgtagtctgaaattgctgaca-gagtcat--attctctttaatgact-----------------gttgcagGTTTTGATGGCTACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCAGGCCTGGAAGAATTGATAGGAAAATTGAATTTCCTAATCCTAATGAAGAG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 6
lower sequence: AT5G20000.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaaaggagctatactgttatgtgtattaaggggaattttaaagctagtcttatgtccactgttctgaaaagaaatctgtaacagttgaacttaacagatattatttactctgtctgactcatttgagatgagttctcaattctttgtggaggttctgaagataaattttcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG
                                                   |||| |   |||| ||||   |||     || |||   |   | | || |    | ||||||| | ||||   |||  |  |    |||    ||||  |   ||| || || | |      ||| ||||||||||||| |||||||| |||||||| ||||||||||| || ||  | |||||| |||||||  |||| ||||||||||| || ||||||||||||
--------------------------------------------------gtatgccttatgttgtgaatgaaaa-----aatagtc--atgaagctgaaaaggataactctgtgttactc---tgaatttcgcagacaaa--gttgttaattctcttaa-atgact-----gttgcagGTTTTGATGGCTACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCCGGCCTGGAAGGATTGATAGGAAAATTGAATTTCCTAATCCTAATGAAGAG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv04s0008g04690.t01 (Vitis vinifera), 3'ss of exon 6
gtaaaggagctatactgttatgtgtattaaggggaattttaaagctagtcttatgtccactgttctgaaaagaaatctgtaacagttgaacttaacagatattatttactctgtctgactcatttgagatgagttctcaattctttgtggaggttctg---aagataaattttcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG
                                                                                                |    | | | | |     |   |  |   |  | |  | |    ||| |    |  |  ||    |||| |   || | ||  ||||||||||||| |||||||| ||||||||  ||||||||||||||||||| |||||||| |||||| |||||||||| || ||||| || || ||||||
----------------------------------------------------------------------------------------------gtactcctcaataatttctcttcgttggtagtaagttaaattttgtctctgtaaataactattgtatgagatgaccattta-ttacagGTTTTGATGGCTACAAATCGCATTGATATTTTGGATCAAGCCCTCCTTAGGCCTGGACGAATTGACAGGAAGATTGAGTTCCCAAATCCCAACGAAGAG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0002g05800.t01 (Vitis vinifera), 3'ss of exon 6
gtaaaggagctatactgttatgtgtattaaggggaattttaaagctagt-cttatgtccactgt-tctgaaaagaaatctgtaacagttgaacttaacagatattatttactctgtctgactcatttgagatgagttc-tcaattctttgtggaggttctgaagataaattttcaat---tgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG
|||       || | || ||    | ||        | |    |   || |  |  |  | | | | ||   |   || ||||  |  ||    |   |  | |||| || |        |  | | |     | ||  |  | ||| | ||     ||||     | ||  |||||   |  ||||||| ||||| |||||||| |||||||| || || ||||||||||| || || |||||||||||| |||||||||| |||||||| || ||||  |||
gtactattaata-attgctaccctttttgcttctgctgtagttgtgtgtgcccacttgtattatatttgtgtatttatatgtatta--tgtgtgtggtatttgttatctagtagaatcagcaaaatggttggaaattggtggaatctgtatgtcatatctgtgacaacatgatcaatattttcagGTTTTAATGGCTACAAATCGAATTGATATTCTTGACCAAGCCCTCCTCAGGCCAGGACGGATTGACAGGAAGATTGAGTTTCCAAATCCCAATGGGGAG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S7016_1V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaaaggagctatactgttatgtgtattaaggggaattttaaagctagtcttatgtccactgttctgaaaagaaatctgtaacagttgaacttaacagatattatttac-tctgtctgactcatttgagatgagttctcaattctttgtggaggttctgaagataaattttcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG
                                                              ||  |  |  ||||    |||| |   |  |     | |||   | | | |  |||  | | ||   |    || |||| |   | |   ||  || |               || |||| |||||||| || ||||| |||||||| || |||||||| ||| |  |||| ||||| ||||||||||| ||||| || || || || |  ||||||
--------------------------------------------------------------ttgggtgagtaaata---aacaatcacatgttctgaaaattgccttcgtgttgctggttgactttcaactgattatcaactacctatcttgggactta---------------tgcagGTGTTGATGGCTACGAATCGAATTGATATTCTAGATCAAGCTCTCTTGCGACCCGGACGAATTGACCGGAAAATTGAGTTCCCCAATCCAACCGAAGAG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S245_17V6.1 (Physcomitrella patens), 3'ss of exon 6
gtaaaggagctatactgttatgtgtattaaggggaattttaa--agctagtcttatgtccactgttctgaaaagaaatctgtaacagttga-acttaacagatattatttactctgtctgactcatttg--agatgagttctcaattctttgtggaggttctgaagataaattttcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG
               || | |    |        ||||      |  || |  | |||      |  |      || ||| | |   || | |||| | | |     | |  ||  |||  || |||||  || | || ||  |||| || ||  |   ||   | ||   | |   |||||||||||||||||| || ||||| ||||||||| |||||||||||||  |  | |||||||| |||||||||||||| || || || || || | |||||||
------------gtttgctcttcacaactgacacaattgaggtcatttacttatttgtttgagttgtttgtggtaattctatgatccttcatacttgaaaaagg--gtctcatcaatcttgct-atttgccagcttagctcg-aattgttcgttaa--ctc---acattgttgtaacattgtagGTTTTGATGGCAACCAATCGAATTGATATCTTGGATCAAGCCCTTTTGCGTCCTGGACGAATTGACCGGAAGATCGAGTTCCCCAATCCAACTGAAGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254333838|gb|GR848756.1|GR848756
EST:     TGGAACTTCTCAATCAGTTGGATGGA-TTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATAT-CTGGATCAAGCCCTCTTTAGA
genomic: TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|254325634|gb|GR838515.1|GR838515
EST:     TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|151400412|gb|EV270226.1|EV270226
EST:     TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|16346794|gb|BI972389.1|BI972389
EST:     TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|16279574|gb|BI943506.1|BI943506
EST:     TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|209705801|gb|BW661469.1|BW661469
EST:     CTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: CTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|9819982|gb|BE555495.1|BE555495
EST:     TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|254349062|gb|GR860334.1|GR860334
EST:     TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|31306289|gb|CD391492.1|CD391492
EST:     TTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: TTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|15589667|gb|BI674283.1|BI674283
EST:     TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|13562459|gb|BG550679.1|BG550679
EST:     TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|254333837|gb|GR848755.1|GR848755
EST:     TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|15661720|gb|BI699091.1|BI699091
EST:     TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|192298661|gb|FG990957.1|FG990957
EST:     TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|37997552|gb|CF809141.1|CF809141
EST:     CTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: CTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|15589675|gb|BI674291.1|BI674291
EST:     TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|208095215|gb|GD895753.1|GD895753
EST:     TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|254325633|gb|GR838514.1|GR838514
EST:     TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACA-GATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTT
genomic: TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTT
EST: gi|151412070|gb|EV281882.1|EV281882
EST:     TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|16284142|gb|BI945928.1|BI945928
EST:     TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAC                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCTCTACTTAGA
genomic: TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|120534367|gb|EH262500.1|EH262500
EST:     TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|208147800|gb|GD947595.1|GD947595
EST:     GAACTTCTCAATCTAGTTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: GAACTTCTCAATC-AG-TTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|16996050|gb|BM085422.1|BM085422
EST:     TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|120494201|gb|EH222368.1|EH222368
EST:     TGGAACTTCTCAATCAATTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|18690675|gb|BM519523.1|BM519523
EST:     TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
EST: gi|208134117|gb|GD931336.1|GD931336
EST:     TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGA
genomic: TGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGA
EST: gi|209706925|gb|BW661510.1|BW661510
EST:     ATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAG                         GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA
genomic: ATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagc ... tcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagatgagttctcaattctttgtggaggttctgaagataaattttcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG
                                          ttttc  CT-rich tract
                                  aagataaattttcaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaaggagctatactgttatgtgtattaaggggaattttaaagctagtcttatgtccactgttctgaaaagaaatctgtaacagttgaacttaacagatattatttactctgtctgactcatttgagatgagttctcaattctttgtggaggttctgaagataaattttcaattgtagGTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA