1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atgaattttgacactattaaagaaactaaatgtacaacaatggaatcattcagagcattagttaacatgaccctgaattgggtgtactattctgtggtagGGCTTGGCGGAGGAACTGAGTAAAGAAGGAGCATGCGAGCAAGCAATATTTCCAGACACAAATAAAGTTATAACCAAATGTGCTATGATTGGTAATTTGT
species | Glycine max |
transcript | GLYMA08G22740.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCAAGTTCCCAAGGCATTACAGAACAAGCCAATTGACTTCTTTAATAAG GGCTTGGCGGAGGAACTGAGTAAAGAAGGAGCATGCGAGCAAGCAATATTTEST: gi|192314804|gb|FK006016.1|FK006016
genomic: TTCAAGTTCCCAAGGCATTACAGAACAAGCCAATTGACTTCTTTAATAAGgtaaatagct ... tctgtggtagGGCTTGGCGGAGGAACTGAGTAAAGAAGGAGCATGCGAGCAAGCAATATTT
EST: TTCAAGTTCCCAAGGCATTACAGAACAAGCCAATTGACTTCTTTAATAAG GGCTTGGCGGAGGAACTGAGTAAAGAAGGAGCATGCGAGCAAGCAATATTTEST: gi|17519754|gb|BM188796.1|BM188796
genomic: TTCAAGTTCCCAAGGCATTACAGAACAAGCCAATTGACTTCTTTAATAAGgtaaatagct ... tctgtggtagGGCTTGGCGGAGGAACTGAGTAAAGAAGGAGCATGCGAGCAAGCAATATTT
EST: TTCAAGTTCCCAAGGCATTACAGAACAAGCCAATTGACTTCTTTAATAAG GGCTTGGCGGAGGAACTGAGTAAAGAAGGAGCATGCGAGCAAGCAATATTTEST: gi|213596677|gb|DB977993.1|DB977993
genomic: TTCAAGTTCCCAAGGCATTACAGAACAAGCCAATTGACTTCTTTAATAAGgtaaatagct ... tctgtggtagGGCTTGGCGGAGGAACTGAGTAAAGAAGGAGCATGCGAGCAAGCAATATTT
EST: TTCAAGTTCCCAAGGCATTACAGAACAAGCCAATTGACTTCTTTAATAAG GGCTTGGCGGAGGAACTGAGTAAAGAAGGAGCATGCGAGCAAGCAATATTT
genomic: TTCAAGTTCCCAAGGCATTACAGAACAAGCCAATTGACTTCTTTAATAAGgtaaatagct ... tctgtggtagGGCTTGGCGGAGGAACTGAGTAAAGAAGGAGCATGCGAGCAAGCAATATTT
tcattcagagcattagttaacatgaccctgaattgggtgtactattctgtggtagGGCTTGGCGGAGGAACTGAGTAAAGAAGGAGCATGCGAGCAAGCAATATTTCCAGACACAAATAAAGTTATAACCAAATGTGCTATGATTGGTAATTTGT
agttaac putative branch site (score: 3)
ctattct putative PPT
attagttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaattttgacactattaaagaaactaaatgtacaacaatggaatcattcagagcattagttaacatgaccctgaattgggtgtactattctgtggtagGGCTTGGCGGAGGAACTGAGTAAAGAAGGAGCATGCGAGCAAGCAATATTTCCAGACACAAATAAAGTTATAACCAAATGTGCTATGATTGGTAATTTGT
- - - - tgacact
- - - - - - - - - aaagaaa
- - - - - - - - - - - - - - aatgtac
- - - - - - - - - - - - - - - - - - -caatgga
- - - - - - - - - - - - - - - - - - - - - - -tcattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgggtg