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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggaagttttgttgataagggaatcctagctcccattcctcagtcaaactgtaatattgtgcaaggaaaagggaccagagtacctcttgctgttatcctttgtgtttttttgcacaaacataaatggtgtgaggtatttccatgctagttttaacataggcaatctcaatgtgattgcagCAAGGTGATCCAATTGATGGGCGATACGAAGAATTCACGGAGAGGGGTACTATAATTGAACAGTTCGTGTATTGTATAAATAGTTACAGACAAGTTGCAA

Basic information

species Glycine max
transcript GLYMA08G22100.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208268296|gb|GE067681.1|GE067681
EST:     AAGATGAAACTAAAGGTGTATATATTGCCAAGCTTGAAGAACTCAAAAAG                         CAAGGTGATCCAATTGATGGGCGATACGAAGAATTCACGGAGAGGGGTACT
genomic: AAGATGAAACTAAAGGTGTATATATTGCCAAGCTTGAAGAACTCAAAAAGgttaggaagt ... gtgattgcagCAAGGTGATCCAATTGATGGGCGATACGAAGAATTCACGGAGAGGGGTACT
EST: gi|18038919|gb|BM307213.1|BM307213
EST:     AAGATGAAACTAAAGGTGTATATATTGCCAAGCTTGAAGAACTCAAAAAG                         CAAGGTGATCCAATTGATGGGCGATACGAAGAATTCACGGAGAGGGGTACT
genomic: AAGATGAAACTAAAGGTGTATATATTGCCAAGCTTGAAGAACTCAAAAAGgttaggaagt ... gtgattgcagCAAGGTGATCCAATTGATGGGCGATACGAAGAATTCACGGAGAGGGGTACT
EST: gi|51335761|gb|CO979627.1|CO979627
EST:     AAGATGAAACTAAAGGTGTATATATTGCCAAGCTTGAAGAACTCAAAAAG                         CAAGGTGATCCAATTGATGGGCGATACGAAGAATTCACGGAGAGGGGTACT
genomic: AAGATGAAACTAAAGGTGTATATATTGCCAAGCTTGAAGAACTCAAAAAGgttaggaagt ... gtgattgcagCAAGGTGATCCAATTGATGGGCGATACGAAGAATTCACGGAGAGGGGTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgtgaggtatttccatgctagttttaacataggcaatctcaatgtgattgcagCAAGGTGATCCAATTGATGGGCGATACGAAGAATTCACGGAGAGGGGTACTATAATTGAACAGTTCGTGTATTGTATAAATAGTTACAGACAAGTTGCAA
                       ttttaac  putative branch site (score: 2)
                       ttttaacata  TA-rich tract