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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactgaaagcacatgttttaacctgttcacattcaaggcctatttcatgtattattcttgtgatggatgtctattagGACCTTCCGTCAGAGGAAATGGGTGTTGGTACTCGGGAAATGGGATATCTTTTTGGACAGTATAGGCGTCTCGCAGGTCATTTTCAG

Basic information

species Glycine max
transcript GLYMA08G20930.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20930.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G015289_T01 (Zea mays), 3'ss of exon 5
---------------------------gtaactgaaagcacatgttttaacct--gttca--cattcaaggcctatttcatgtat-tattcttgtgatggatgtctatt---------agGACCTTCCGTCAGAGGAAATGGGTGTTGGTACTCGGGAAATGGGATATCTTTTTGGACAGTATAGGCGTCTCGCAGGTCATTTTCAG
                           || | || |      | |||  |  |  ||| |   |  ||| | || ||    || | ||||  | |    ||  |  ||          ||||  ||||  | || || || ||||||||| |  |||||||||| || |||||||| |||||||| |||||  | ||||||||||||
gtacttcccagttaaacttgatacccagttattggagttttttatttctatattagttaagtgaagcaatgactgttcttagtctatattaatatttcagactttgatcttttggtccagGATTTTCCCGCTGAAGATATTGGTGTTGGTCCAAGGGAAATGGGTTACCTTTTTGGGCAGTATAGACGTCTTTCTGGTCATTTTCAG

upper sequence: GLYMA08G20930.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G51720.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaactgaaagcacatgttttaacctgttcacattcaaggcctatttcatgtattattcttgtgatggatgtctattagGACCTTCCGTCAGAGGAAATGGGTGTTGGTACTCGGGAAATGGGATATCTTTTTGGACAGTATAGGCGTCTCGCAGGTCATTTTCAG
|||| |  ||     | ||||| ||| ||  ||   |   |||  |||    || ||| ||        | |    ||||| ||||||||||||||  | |||||||||||||||||||||||||||||||||||||| ||||| || || || ||||| ||||||
gtaagtagaa---tgttttttaccct-ttagcaagtacatcct--ttctgcaatgatttttaaatctattatactgtagGATCTTCCGTCAGAGGAGGTTGGTGTTGGTACTCGGGAAATGGGATATCTTTTTGGACAATATAGACGACTTGCTGGTCAGTTTCAG

upper sequence: GLYMA08G20930.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0002g02530.t01 (Vitis vinifera), 3'ss of exon 5
---------------------gtaactgaaagcacatgttt--taacctgttcacattcaaggcctatttcatgtattattc----ttgtgatggatgtctat-tagGACCTTCCGTCAGAGGAAATGGGTGTTGGTACTCGGGAAATGGGATATCTTTTTGGACAGTATAGGCGTCTCGCAGGTCATTTTCAG
                         |  |  |     ||||  |||    || |  ||  |   || ||  ||||    |||    |||||  |  | |   | ||||| ||||| |||||||| |||||||||||| |||| |||||||| ||||| |||||||| ||||| || || |||||||||||||||
gtatacaaaacaaaatatcattggtccaattgtttcagtttcctaatggatttaagtttcaaatcttttagatgtccagttccgcattgtgtggtttattgttgtagGATCTTCCTTCAGAGGAGATGGGTGTTGGTCCTCGAGAAATGGGTTATCTCTTTGGACAATATAGACGCCTAGCAGGTCATTTTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7924271|gb|AW830297.1|AW830297
EST:     TTTGCCAAAGTTTCATGAGTGAAATGTATCGCTACCTGGGGCCTGACAAG                         GACCTTCCGTCAGAGGAAATGGGTGTTGGTACTCGGGAAATGGGATATCTT
genomic: TTTGCCAAAGTTTCATGAGTGAAATGTATCGCTACCTGGGGCCTGACAAGgtaactgaaa ... tgtctattagGACCTTCCGTCAGAGGAAATGGGTGTTGGTACTCGGGAAATGGGATATCTT
EST: gi|16997272|gb|BM086644.1|BM086644
EST:     TTTGCCAAAGTTTCATGAGTGAAATGTATCGCTACCTGGGGCCTGACAAG                         GACCTTCCGTCAGAGGAAATGGGTGTTGGTACTCGGGAAATGGGATATCTT
genomic: TTTGCCAAAGTTTCATGAGTGAAATGTATCGCTACCTGGGGCCTGACAAGgtaactgaaa ... tgtctattagGACCTTCCGTCAGAGGAAATGGGTGTTGGTACTCGGGAAATGGGATATCTT
EST: gi|193578443|gb|FK537663.1|FK537663
EST:     TTTGCCAAAGTTTCATGAGTGAAATGTATCGCTACCTGGGGCCTGACAAG                         GACCTTTCCGTTCTAGAGGAAATGGGTGTTGGTACTCGGGAAATGGGATAT
genomic: TTTGCCAAAGTTTCATGAGTGAAATGTATCGCTACCTGGGGCCTGACAAGgtaactgaaa ... tgtctattagGACCTT-CCGT-C-AGAGGAAATGGGTGTTGGTACTCGGGAAATGGGATAT
EST: gi|193604120|gb|FK555529.1|FK555529
EST:     TTTGCCAAAGTTTCATGAGTGAAATGTATCGCTACCTGGGGCCTGACAAG                         GACCTTCCGTCAGAGGAAATGGGTGTTGGTACTCGGGAAATGGGATATCTT
genomic: TTTGCCAAAGTTTCATGAGTGAAATGTATCGCTACCTGGGGCCTGACAAGgtaactgaaa ... tgtctattagGACCTTCCGTCAGAGGAAATGGGTGTTGGTACTCGGGAAATGGGATATCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttcacattcaaggcctatttcatgtattattcttgtgatggatgtctattagGACCTTCCGTCAGAGGAAATGGGTGTTGGTACTCGGGAAATGGGATATCTTTTTGGACAGTATAGGCGTCTCGCAGGTCATTTTCAG
                  tatttcatgtattatt  TA-rich tract