1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acaaccatgaggatgtctgccattttatataacgtgtatccccctattgattttagtttaccaacagttggaactgttttgttaacctgactttttccagGTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGATGATGAAATCCTTGATACCATTATTGATAAG
species | Glycine max |
transcript | GLYMA08G20700.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAA GTTAGGCAAATGGTTGTTGCCATTCTGTCAGAAEST: gi|193568335|gb|FK523902.1|FK523902
genomic: CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAAgtgagtatct ... ctttttccagGTTAGGCAAATGGTTGTTGCCATTCTGTCAGAA
EST: CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAA GTT-GGCAA-TGGTTGTTNCCATTCTGTCAGAAEST: gi|192329211|gb|FK020130.1|FK020130
genomic: CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAAgtgagtatct ... ctttttccagGTTAGGCAAATGGTTGTTGCCATTCTGTCAGAA
EST: CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAA GTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGATEST: gi|151410451|gb|EV280266.1|EV280266
genomic: CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAAgtgagtatct ... ctttttccagGTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGAT
EST: CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAA GTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGATEST: gi|208067823|gb|GD864945.1|GD864945
genomic: CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAAgtgagtatct ... ctttttccagGTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGAT
EST: CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAA GTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGATEST: gi|193521327|gb|FK478590.1|FK478590
genomic: CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAAgtgagtatct ... ctttttccagGTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGAT
EST: CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAA GTTAGGCAAATEST: gi|151396695|gb|EV266568.1|EV266568
genomic: CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAAgtgagtatct ... ctttttccagGTTAGGCAAAT
EST: CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAA GTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGAT
genomic: CTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGAGAGAAGAAgtgagtatct ... ctttttccagGTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGAT
attgattttagtttaccaacagttggaactgttttgttaacctgactttttccagGTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGATGATGAAATCCTTGATACCATTATTGATAAG
ctttttcc CT-rich tract
ttttagttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaaccatgaggatgtctgccattttatataacgtgtatccccctattgattttagtttaccaacagttggaactgttttgttaacctgactttttccagGTTAGGCAAATGGTTGTTGCCATTCTGTCAGAATGTGGCATGGATCTGGATGATGAAATCCTTGATACCATTATTGATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
-caaccat
- - - - gaggatg
- - - - - - - - ctgccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacctga