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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatattttcatgttgggatatgcaactgtatttttttcttttaaatttcattcctctatgctgaatggttttcggtctgaaatgaattgtcttttaagaagaatgtatgatgtttatgtatagtattgtattttgtgagaactttatatatttaagtaacaatttctgtaatcattgtgcagGTAATTATAGGCTCTTCAGATTTAAAAGCTAACCATGCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAA

Basic information

species Glycine max
transcript GLYMA08G20670.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20670.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0002g02100.t01 (Vitis vinifera), 3'ss of exon 6
gtaagatattttcatgttgggatatgcaactgtatttttttcttttaaatttcattcctctatgctgaatggttttcggtctgaaatgaattgtcttttaagaagaatgtatgatgtttatgtatagtattgta----ttttgtgagaactttatatatttaagtaacaatttctgtaatcattgtgcagGTAATTATAGGCTCTTCAGATTTAAAAGCTAACCATGCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAA
                                                                                         |||  |  | | ||        |  ||| |  |     |  | ||    ||   | |  || | || ||||| | |     | ||  |     || || ||||  ||||||| ||| ||||| ||||||||||||||||||| || ||  |||| || |||||||| || || ||||||||  | | 
-----------------------------------------------------------------------------------------attaccaatcatgatatgccggttctgtattggggggattctctagtctttccctcaatacatgat-tatttgatttgtgttctcgttggattttatgtagGTGGTTATAGGATCTGCAGATCTAAAAGCTAACCATGCAATTCGTCAGCATGTGGAGATTGTTTCCGAGAATCAGAAATACAACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58020488|gb|CX707230.1|CX707230
EST:     AAGGAAGTTCCTTTATAACCCATACAAA                         GTAATTATAGGCTCTTCAGATTTAAAAGCTAACCATGCAATACGGCAATAT
genomic: AAGGAAGTTCCTTTATAACCCATACAAAgtaagatatt ... cattgtgcagGTAATTATAGGCTCTTCAGATTTAAAAGCTAACCATGCAATACGGCAATAT
EST: gi|58020876|gb|CX707618.1|CX707618
EST:     GAGGTTGACCAATNGGCAAGGAAGTTCCTTTATAACCCATACAAA                         GTAATTATAGGCTCTTCAGATTAAAAAGCTAACCATGCAATACGGCAATAT
genomic: GAGGTTGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAAgtaagatatt ... cattgtgcagGTAATTATAGGCTCTTCAGATTTAAAAGCTAACCATGCAATACGGCAATAT
EST: gi|58020680|gb|CX707422.1|CX707422
EST:     CAAAGGAGGTTGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAA                         GTAATTATAGGCTCTTCAGATTTAAAAGCTAACCATGCAATACGGCAATAT
genomic: CAAAGGAGGTTGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAAgtaagatatt ... cattgtgcagGTAATTATAGGCTCTTCAGATTTAAAAGCTAACCATGCAATACGGCAATAT
EST: gi|15204508|gb|BI427276.1|BI427276
EST:     CAAAGGAGGTTGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAA                         GTAATTATAGGCTCTTCAGATTTAAAAGCTAACCATGCAATACGGCAATAT
genomic: CAAAGGAGGTTGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAAgtaagatatt ... cattgtgcagGTAATTATAGGCTCTTCAGATTTAAAAGCTAACCATGCAATACGGCAATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattttgtgagaactttatatatttaagtaacaatttctgtaatcattgtgcagGTAATTATAGGCTCTTCAGATTTAAAAGCTAACCATGCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAA
                          aagtaac  putative branch site (score: 2)
               tttatatatttaagta  TA-rich tract