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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggataagctaatcctgattcaatgtgctcattttcatttgcaatttcaagattctcattatttactttactattttaatgttaatcagAAAAAAAGATCACTCTTAGTTGTTGCTGAAGATGTTGAGAGTGATGCGTTGGCTATGCTCATACTCAACAAGCATCACGCGGGGCTTAAG

Basic information

species Glycine max
transcript GLYMA08G20560.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20560.2 (Glycine max), 3'ss of exon 6
lower sequence: AT3G13860.1 (Arabidopsis thaliana), 3'ss of exon 8
---------------------gtggataagctaatcctga--ttcaatgtgctcattttcatttgcaatttcaaga----ttctcattatttactttactattttaatgttaatcagAAAAAAAGATCACTCTTAGTTGTTGCTGAAGATGTTGAGAGTGATGCGTTGGCTATGCTCATACTCAACAAGCATCACGCGGGGCTTAAG----------
                      | ||  |     | ||||  | |  | ||    |||  ||       | |||||    | |||| |  || || |  |  |||   |||   ||||  |  ||| ||||  |  |||| || |||||||||||||||||||| || |||||||| || ||||| |||||||| |  |||||||||          
gtaaagcattcccttgattatctagaatactatgttctgaagtccggtttggcggtttctatagttggctacaagaaaactactcacttctttctcttattgtttgcggttgtgcagAGTAGTAGACCACTTCTTATTGTAGCAGAAGATGTTGAGAGTGATGCATTAGCTATGCTTATTCTCAATAAGCATCATGGTGGGCTTAAGGTATGTGCTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatttgcaatttcaagattctcattatttactttactattttaatgttaatcagAAAAAAAGATCACTCTTAGTTGTTGCTGAAGATGTTGAGAGTGATGCGTTGGCTATGCTCATACTCAACAAGCATCACGCGGGGCTTAAG
                                       ttttaat  putative branch site (score: 3)
                 attctcattatttact  TA-rich tract