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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctttaaatataaaaatttcatgcctttgattttggaagtgtatatatgcttttttttctatctttttgtttccagatgttgataagatatgtattttctcaattggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAGAGGTTCTCGGATATGCCTCCAAGGTGGTGCTCACCAAGGATACAACCAC

Basic information

species Glycine max
transcript GLYMA08G18760.3
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18760.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0004g00240.t01 (Vitis vinifera), 3'ss of exon 7
gtctttaaatataaaaatttcatgcctttgattttggaagtgtatatatgcttttttttctatctttttgtttccagatgttgataagatatgtatttt--ctcaattggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAGAGGTTCTCGGATATGCCTCCAAGGTGGTGCTCACCAAGGATACAACCAC
                 | |    | ||| ||  ||||   ||     |  || |||   | | ||    ||   |  | || | ||       |||||     |||  | ||  ||| |||||||| ||||| ||||| || || ||  | |||||||||| ||| |||||| | ||  ||||  | ||||||||||| |||||||||||||||||
-----------------tattgcccttttaatagtggattagtggtcttatttatttggttgttttcggcttcatatgtattcacaatgctgacattttactctaatgagcttgtagGAACTGTAATTAGAGATGAGGTGGGGCTCACCCTAGACAAAGCTGAGAAGGAGGTTTTAGGCCATGCTGCAAAGGTGGTGCTTACCAAGGATACAACCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298191386|gb|HO038865.1|HO038865
EST:     TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|17964146|gb|BM270885.1|BM270885
EST:     GAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: GAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|16281997|gb|BI944781.1|BI944781
EST:     TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|15589931|gb|BI674547.1|BI674547
EST:     TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|16284918|gb|BI946338.1|BI946338
EST:     TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|16282846|gb|BI945236.1|BI945236
EST:     CAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: CAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|151401848|gb|EV271661.1|EV271661
EST:     ACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: ACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|20075657|gb|BQ094440.1|BQ094440
EST:     TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|26268602|gb|CA819665.1|CA819665
EST:     TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|193353569|gb|FK319365.1|FK319365
EST:     TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTTGGCCTTACTTTGGACAAAGCTGGGAAA
genomic: TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGG-TTGGCCTTACTTTGGACAAAGCTGGGAAA
EST: gi|208238870|gb|GE036346.1|GE036346
EST:     TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|15813847|gb|BI786122.1|BI786122
EST:     TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|16276796|gb|BI942048.1|BI942048
EST:     TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|207792803|gb|GD764583.1|GD764583
EST:     TGGAGATCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|16279198|gb|BI943310.1|BI943310
EST:     TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|120530550|gb|EH258683.1|EH258683
EST:     TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|16278942|gb|BI943174.1|BI943174
EST:     TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|27426513|gb|CA938033.1|CA938033
EST:     TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|298172173|gb|HO021765.1|HO021765
EST:     TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|298196897|gb|HO041640.1|HO041640
EST:     TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|16284535|gb|BI946141.1|BI946141
EST:     TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|151412595|gb|EV282407.1|EV282407
EST:     TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|16278862|gb|BI943133.1|BI943133
EST:     TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
EST: gi|207735456|gb|GD710299.1|GD710299
EST:     TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAG                         GTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG
genomic: TGGAGAGCGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACTGGAGgtctttaaat ... tggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctttttgtttccagatgttgataagatatgtattttctcaattggtttacagGTACTGTAATCAGAGAAGAGGTTGGCCTTACTTTGGACAAAGCTGGGAAAGAGGTTCTCGGATATGCCTCCAAGGTGGTGCTCACCAAGGATACAACCAC
                  tgttgat  putative branch site (score: 4)
                       ataagatatgtatttt  TA-rich tract