1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgaaaagctctctgatgcttttaaaatcttaaaacttttatatataatttgatgtacttgatcgcgagtaagtgatgactaaaccctttttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCATTGGAGGAGGTGACTCTGTTGCCGCTGTGGAGAAGGTTGGTCTTGCAG
species | Glycine max |
transcript | GLYMA08G17600.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|214004623|gb|DB985360.1|DB985360
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: TGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCTC-CAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|16344823|gb|BI970418.1|BI970418
genomic: TGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGC-CACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|193644454|gb|FK589920.1|FK589920
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|213614671|gb|DB980593.1|DB980593
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: GGATCAAT-GGTCGTTTTTGAGTTTGATAAGTTTGCCTA-AGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATAEST: gi|254341878|gb|GR853015.1|GR853015
genomic: GGACCAATGGGT-GTTTTTGAGTTTGATAAGTTTGCC-ACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|193487170|gb|FK450891.1|FK450891
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: AGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|193699075|gb|FK636268.1|FK636268
genomic: AGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|7028539|gb|AW458322.1|AW458322
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGTACCAATGGGTGATATTGAGTTTGATGAGTATGCCACAGGAACAGAG GCCATAGCCAAEST: gi|213594848|gb|DB975526.1|DB975526
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAA
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCTACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|58023047|gb|CX709788.1|CX709788
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|58018976|gb|CX705718.1|CX705718
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|13312572|gb|BG406223.1|BG406223
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|208310101|gb|GE109367.1|GE109367
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGA-TAACGACCATCEST: gi|209721584|gb|BW671725.1|BW671725
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: TGGACCAATGGGTGTTTTTGAGTTTGATAAG-TTGNCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|213600122|gb|DB976039.1|DB976039
genomic: TGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTG-CCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|193360606|gb|FK328162.1|FK328162
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|192314966|gb|FK010784.1|FK010784
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|208074294|gb|GD868659.1|GD868659
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|207712806|gb|GD693430.1|GD693430
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: GGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|207702210|gb|GD682965.1|GD682965
genomic: GGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: TGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|207765800|gb|GD735119.1|GD735119
genomic: TGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|213610588|gb|DB978587.1|DB978587
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: TGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|193385634|gb|FK350254.1|FK350254
genomic: TGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGGACCAATGG-TGTTTT-GAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|192306299|gb|FG995093.1|FG995093
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|207753511|gb|GD722829.1|GD722829
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATEST: gi|207775510|gb|GD747305.1|GD747305
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCAT
EST: TGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|193686757|gb|FK626122.1|FK626122
genomic: TGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: TTGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|208150093|gb|GD951667.1|GD951667
genomic: -TGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATAAGTTTGCCACTAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|58019207|gb|CX705949.1|CX705949
genomic: ATAAGTTTGCCAC-AGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|209709350|gb|BW678894.1|BW678894
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|7029931|gb|AW459714.1|AW459714
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|193388263|gb|FK356578.1|FK356578
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|17023004|gb|BM094030.1|BM094030
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCEST: gi|21285792|gb|BQ473663.1|BQ473663
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
EST: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAG GCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
genomic: ATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGgtaagaatga ... ttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATC
taatttgatgtacttgatcgcgagtaagtgatgactaaaccctttttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCATTGGAGGAGGTGACTCTGTTGCCGCTGTGGAGAAGGTTGGTCTTGCAG
gactaaa putative branch site (score: 2)
ccctttttctgcac CT-rich tract
tttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaaaagctctctgatgcttttaaaatcttaaaacttttatatataatttgatgtacttgatcgcgagtaagtgatgactaaaccctttttctgcacagGCCATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTAACGACCATCATTGGAGGAGGTGACTCTGTTGCCGCTGTGGAGAAGGTTGGTCTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- gaaaagc
- - - - - - ctgatgc
- - - - - - - - - - - - - - - - - - - - - - - - - tgatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgac