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gtaatctacaaattttgtccattttaagttcattgtagttcatttagcttcaaataatttgaagtttgaatgatggcatggctgattacactgcctgatgatgttttacatagGTTCCTGCTCTCATATACATCTGCAGCTTTGTTGTGTCTATAGCATTACAG
species | Glycine max |
transcript | GLYMA08G16870.4 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTG GTTCCTGCTCTCATATACATCTGCAGCTTTGTTGTGTCTATAGCATTACAGEST: gi|11274169|gb|BF324537.1|BF324537
genomic: CTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTGgtaatctaca ... ttttacatagGTTCCTGCTCTCATATACATCTGCAGCTTTGTTGTGTCTATAGCATTACAG
EST: CTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTG GTTCCTGCTCTCATATACATCTGCAGCTTTGTTGTGTCTATAGCATTACAGEST: gi|6667043|gb|AW278502.1|AW278502
genomic: CTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTGgtaatctaca ... ttttacatagGTTCCTGCTCTCATATACATCTGCAGCTTTGTTGTGTCTATAGCATTACAG
EST: CTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTG GTTCCTGCTCTCATATACATCTGCAGCTGTGTTGTGTCTATAEST: gi|18040825|gb|BM309119.1|BM309119
genomic: CTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTGgtaatctaca ... ttttacatagGTTCCTGCTCTCATATACATCTGCAGCTTTGTTGTGTCTATA
EST: CTTTCTTTGTCATTAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTG GGTCCTGCTCTCATATACTTCTGCAGCTTT
genomic: CTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTGgtaatctaca ... ttttacatagGTTCCTGCTCTCATATACATCTGCAGCTTT
ttgaagtttgaatgatggcatggctgattacactgcctgatgatgttttacatagGTTCCTGCTCTCATATACATCTGCAGCTTTGTTGTGTCTATAGCATTACAG
gcctgat putative branch site (score: 4)
ttttacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatctacaaattttgtccattttaagttcattgtagttcatttagcttcaaataatttgaagtttgaatgatggcatggctgattacactgcctgatgatgttttacatagGTTCCTGCTCTCATATACATCTGCAGCTTTGTTGTGTCTATAGCATTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT