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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcatagatcatccatcaatagcattcataggtactagaattagggcaattaattactgactttggatgttcttccgtggtggcagGTCTGGTTTCGTGTTAATGAGCAACTACCTATTAATTTACAGAAGTCATTACCTGACAGACCACCTGAATTGCCCTCATCCAACGATCATGAAGGTGACG

Basic information

species Glycine max
transcript GLYMA08G15920.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G15920.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G051079_T01 (Zea mays), 3'ss of exon 5
--------------------------------------gtcatagatcatccat-caatagcattcataggtactagaattagggcaattaattac--tgactttgg--atgttcttccgtggtggcagGTCTGGTTTCGTGTTAATGAGCAACTACCTATTAATTTACAGAAGTCATTACCTGACAGACCACCTGAATTGCCCTCATCCAACGATCATGAAGGTGACG
                                          ||| | |  |||  | |        |||      |||| |    ||||  || |  || |||  |  || | ||       || ||||||||||||||||||||||||| |||  |  || | ||||||||    ||||||||  ||||  |  |   ||| |   |    | ||   ||| ||| |
gcaagagctttgattgattgatcattcatcttcacgatactctaggttagtcatatactgttgcatgtagccctaggaatcaaataaattgttttctttggcttatgctatatgctgtatatttgacagGTCTGGTTTCGTGTTAATGAGCTACTGTCGCTTGAGTTACAGAAAAGGTTACCTGATGGACCTTC--ACCAGCCGTTTCCTTGAGCTCGC-AAGATGAAG

upper sequence: GLYMA08G15920.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G026043_T01 (Zea mays), 3'ss of exon 5
-----------------------------------gtcatagatcatccatcaa-tagcattcataggtactagaattagggcaattaattac--tgactttgg--atgttcttccgtggtggcagGTCTGGTTTCGTGTTAATGAGCAACTACCTATTAATTTACAGAAGTCATTACCTGACAGACCACCTGAATTGCCCTCATCCAACGATCATGAAGGTGACG
                                   ||  ||| | |   ||  | |        |||      |||| ||   ||||  || |  || |||  |  || ||||       || ||||||||||||||||||||||||| ||| ||  || | ||||| ||    ||||||||| ||||  |        ||   |||     |    ||| ||| |
gcaagagtttgattgattggccattcatctccatggtactaggttagtaatagactgttgcatgtagccctaggaatcagataaattgttttctttggcttatgctatattctgtatatttgacagGTCTGGTTTCGTGTTAATGAGCTACTGCCGCTTGAGTTACAAAAAAGTTTACCTGACGGACCTTC---GCCAGCCGTTTCCTTGAGTTTGCAAGATGAAG

upper sequence: GLYMA08G15920.1 (Glycine max), 3'ss of exon 6
lower sequence: AT2G32850.2 (Arabidopsis thaliana), 3'ss of exon 5
gtcatagatcatccatcaatagcattcataggtactagaattagggcaattaattactgactttggatgttcttccgtggtggcagGTCTGGTTTCGTGTTAATGAGCAACTACCTATTAATTTACAGAAGTCATTACCTGACAGACCACCTGAATTGCCCTCATCCAACGATCATGAAGGTGACG
|| | |  |||    | | |  ||||  |   |   ||  ||  || |||  |  | || || |         ||| |     ||| | ||||||||||| |||||||| || |||  |||||||||||| |||||||| ||  ||||||||||| |||  ||  |    |  ||||| |      
gttaaaagtcaatttttact--cattgtttcttctcag--ttgaggaaatgtaa-aatgtctctaacaacatgtccat--ctacagATTTGGTTTCGTGTCAATGAGCAGCTTCCTGCTAATTTACAGAAATCATTACCGGATCGACCACCTGAAATGCAATCTACTGGAGTCCATGATG------

upper sequence: GLYMA08G15920.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv13s0156g00640.t01 (Vitis vinifera), 3'ss of exon 6
-----------------------------------------------gtcatagatcatcca--tcaatagcattcataggtactagaattagggcaattaattactgactttggatgttcttccgtggtggcagGTCTGGTTTCGTGTTAATGAGCAACTACCTATTAATTTACAGAAGTCATTACCTGACAGACCACCTGAATTGCCCTCATCCAACGATCATGAAGGTGACG
                                               ||  |||||  |     || ||  ||    ||||  | || | |        |   | || |   ||    |  ||   |  |||||||| ||||||||||||||||||||| | |||  |   ||||||||||||||||||||||| |||||||   ||     |||    | | |||    ||| |
gcaagcgctttgcttgattggccattcatctccatgactttaggttagttttagatggtttgagtccatgtcaacattaggggccaggaattttctgtctgcatgctaatgctgat--tcttttaatcatggcagGTGTGGTTTCGTGTTAATGAGCAATTGCCTGCTGCATTACAGAAGTCATTACCTGACAGGCCACCTGGGATGAATCAATCTGCGGCTGATGGGCATGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtactagaattagggcaattaattactgactttggatgttcttccgtggtggcagGTCTGGTTTCGTGTTAATGAGCAACTACCTATTAATTTACAGAAGTCATTACCTGACAGACCACCTGAATTGCCCTCATCCAACGATCATGAAGGTGACG
                       tactgac  putative branch site (score: 1)
                                      ttcttccgt  putative PPT
                aattaattact  TA-rich tract