1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaatgtttcatacctttctatctctggttccaccaaatgttaaaatgcaccaaacattcaaaggaagtcgtgttatgttttgtcccattccatactgcagATGTCTCCTGAAGATATTCAGTGGGTAGGTGGGGATCCTGGAGTCAATCATCGTGGGGGTTTTGCTGGATCTGGTAATGGGATGAGTATATCTGTAAGAC
species | Glycine max |
transcript | GLYMA08G15880.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGACTTGGGGACTGCAAATGAATCATGGGAATGGGTTAATCTGTCAGAG ATGTCTCCTGAAGATATTCAGTGGGTAGGTGGGGATCCTGGAGTCAATCATEST: gi|192330092|gb|FK020908.1|FK020908
genomic: TGACTTGGGGACTGCAAATGAATCATGGGAATGGGTTAATCTGTCAGAGgtatatttaa ... catactgcagATGTCTCCTGAAGATATTCAGTGGGTAGGTGGGGATCCTGGAGTCAATCAT
EST: ATGACTTGGGGACTGCAAATGAATCATGGGAATGGGTTAATCTGTCAGAG ATGTCTCCTGAAGATATTCAGTGGGTAGGTGGGGATCCTGGAGTCAATCAT
genomic: ATGACTTGGGGACTGCAAATGAATCATGGGAATGGGTTAATCTGTCAGAGgtatatttaa ... catactgcagATGTCTCCTGAAGATATTCAGTGGGTAGGTGGGGATCCTGGAGTCAATCAT
tgcaccaaacattcaaaggaagtcgtgttatgttttgtcccattccatactgcagATGTCTCCTGAAGATATTCAGTGGGTAGGTGGGGATCCTGGAGTCAATCATCGTGGGGGTTTTGCTGGATCTGGTAATGGGATGAGTATATCTGTAAGAC
ttttgtcccattcc CT-rich tract
ttatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatgtttcatacctttctatctctggttccaccaaatgttaaaatgcaccaaacattcaaaggaagtcgtgttatgttttgtcccattccatactgcagATGTCTCCTGAAGATATTCAGTGGGTAGGTGGGGATCCTGGAGTCAATCATCGTGGGGGTTTTGCTGGATCTGGTAATGGGATGAGTATATCTGTAAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - catacct
- - - - - - - - - - - - - -ttccacc
- - - - - - - - - - - - - - - - - - - - - aaatgca
- - - - - - - - - - - - - - - - - - - - - - - - -ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttatg