1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tttcatgctacatattttttaactacttattttatgctgctgcttgctgctgattttaaaatctttgttgtcttatgctggtttctgtttatgtttcaagATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTACAAGGCAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCA
species | Glycine max |
transcript | GLYMA08G15340.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATACCATCTTTGCTGGAGTTGAAGCAAATCTATTACGAACTAATGATTCG ATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTACAAGGCEST: gi|308097990|gb|HO761161.1|HO761161
genomic: ATACCATCTTTGCTGGAGTTGAAGCAAATCTATTACGAACTAATGATTCGgtaattgaat ... atgtttcaagATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTACAAGGC
EST: ATACCATCTTTGCTGGAGTTGAAGCAAATCTATTACGAACTAATGATTCG ATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTACAAGGCEST: gi|308098358|gb|HO760099.1|HO760099
genomic: ATACCATCTTTGCTGGAGTTGAAGCAAATCTATTACGAACTAATGATTCGgtaattgaat ... atgtttcaagATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTACAAGGC
EST: ATACCATCTTTGCTGGAGTTGAAGCAAATCTATTACGAACTAATGATTCG ATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTACAAGGCEST: gi|308098130|gb|HO761301.1|HO761301
genomic: ATACCATCTTTGCTGGAGTTGAAGCAAATCTATTACGAACTAATGATTCGgtaattgaat ... atgtttcaagATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTACAAGGC
EST: ATACCATCTTTGCTGGAGTTGAAGCAAATCTATTACGAACTAATGATTCG ATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTACAAGGCEST: gi|192296110|gb|FG989470.1|FG989470
genomic: ATACCATCTTTGCTGGAGTTGAAGCAAATCTATTACGAACTAATGATTCGgtaattgaat ... atgtttcaagATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTACAAGGC
EST: ATACCATCTTTGCTGGAGTTGAAGCAAATCTATTACGAACTAATGATTCG ATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTACAAGGCEST: gi|151409280|gb|EV279088.1|EV279088
genomic: ATACCATCTTTGCTGGAGTTGAAGCAAATCTATTACGAACTAATGATTCGgtaattgaat ... atgtttcaagATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTACAAGGC
EST: ATACCATCTTTGCTGGAGTTGAAGCAAATCTATTACGAACTAATGATTCG ATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTACAAGGCEST: gi|19054166|gb|BM732833.1|BM732833
genomic: ATACCATCTTTGCTGGAGTTGAAGCAAATCTATTACGAACTAATGATTCGgtaattgaat ... atgtttcaagATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTACAAGGC
EST: ATACCATCTTTGCTGGAGTTGAAGCAAATCTATTACGAACTAATGATTCG ATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTACAAGGCEST: gi|26057523|gb|CA800437.1|CA800437
genomic: ATACCATCTTTGCTGGAGTTGAAGCAAATCTATTACGAACTAATGATTCGgtaattgaat ... atgtttcaagATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTACAAGGC
EST: ATACCATCTTTGCTGGAGTTGAAGCAAATCTATTACGAACTAATGATTCG ATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTACAAGGCEST: gi|18734293|gb|BM528099.1|BM528099
genomic: ATACCATCTTTGCTGGAGTTGAAGCAAATCTATTACGAACTAATGATTCGgtaattgaat ... atgtttcaagATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTACAAGGC
EST: ATACCATCTTTGCTGGAGTTGAAGCAAATCTATTACGAACTAATGATTCG ATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTAC
genomic: ATACCATCTTTGCTGGAGTTGAAGCAAATCTATTACGAACTAATGATTCGgtaattgaat ... atgtttcaagATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTAC
gctgctgattttaaaatctttgttgtcttatgctggtttctgtttatgtttcaagATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTACAAGGCAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCA
tgctgat putative branch site (score: 3)
attttaaaatctttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcatgctacatattttttaactacttattttatgctgctgcttgctgctgattttaaaatctttgttgtcttatgctggtttctgtttatgtttcaagATATTATTCCCATAACAACGATTATCTTGAAATTTGCCGTTGCTACAAGGCAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- tcatgct
- - - - - - - - - - - - - - - - tatgctg
- - - - - - - - - - - - - - - - -atgctgc
- - - - - - - - - - - - - - - - - - - - -gcttgct
- - - - - - - - - - - - - - - - - - - - - - - - gctgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtc