1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtactgcacttttttttttgctgttttttttcgctcacaatgcatcagatatgttactgtgctctaacccattttctgtttggtcttctgtttcattctagTTGCTTATCTGCTTGGCCTACCCATTTTTGACTATTCACTGGATATTGGGAAAGAGCATGTCAATCTCATTGATGAGAGGCTTGAAAAGCTTATCTATAG
species | Glycine max |
transcript | GLYMA08G14970.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCCTGATTATCAAGAAAGGATTGCCAGGCATGAAGCTGCTCACTTTTTGA TTGCTTATCTGCTTGGCCTACCCATTTTTGACTATTCACTGGATATTGGGAEST: gi|192316483|gb|FK006774.1|FK006774
genomic: TCCTGATTATCAAGAAAGGATTGCCAGGCATGAAGCTGCTCACTTTTTGAgtactgcact ... ttcattctagTTGCTTATCTGCTTGGCCTACCCATTTTTGACTATTCACTGGATATTGGGA
EST: TCCTGATTATCAAGAAAGGATTGCCAGGCATGAAGCTGCTCACTTTTTGA TTGCTTATCTGCTTGGCCTACCCATTTTTGACTATTCACTGGATATTGGGAEST: gi|120532690|gb|EH260823.1|EH260823
genomic: TCCTGATTATCAAGAAAGGATTGCCAGGCATGAAGCTGCTCACTTTTTGAgtactgcact ... ttcattctagTTGCTTATCTGCTTGGCCTACCCATTTTTGACTATTCACTGGATATTGGGA
EST: TCCTGATTATCAAGAAAGGATTGCCAGGCATGAAGCTGCTCACTTTTTGA TTGCTTATCTGCTTGGCCTACCCATTTTTGACTATTCACTGGATATTGGGAEST: gi|209700580|gb|BW670408.1|BW670408
genomic: TCCTGATTATCAAGAAAGGATTGCCAGGCATGAAGCTGCTCACTTTTTGAgtactgcact ... ttcattctagTTGCTTATCTGCTTGGCCTACCCATTTTTGACTATTCACTGGATATTGGGA
EST: TCCTGATTATCAAGAAAGGATTGCCAGGCATGAAGCTGCTCACTTTTTGA TTGCTTATCTGCTTEST: gi|209700581|gb|BW670409.1|BW670409
genomic: TCCTGATTATCAAGAAAGGATTGCCAGGCATGAAGCTGCTCACTTTTTGAgtactgcact ... ttcattctagTTGCTTATCTGCTT
EST: TCCTGA-TATCAAGAAAGGATTGCCAGGCATGAAGCTGCTCACTTTTTGA TTGCTTATCTGCTTGGCCTACCCATTTTTGACTATTCACTGGATATTGGGAEST: gi|192316482|gb|FK006773.1|FK006773
genomic: TCCTGATTATCAAGAAAGGATTGCCAGGCATGAAGCTGCTCACTTTTTGAgtactgcact ... ttcattctagTTGCTTATCTGCTTGGCCTACCCATTTTTGACTATTCACTGGATATTGGGA
EST: TCCTGATTATCAAGAAAGGATTGCCAGGCATGAAGCTGCTCACTTTTTGA TTGCTTATCTGCTTGGCCTACCCATTTTTGACTATTCACTGGATATTGGGAEST: gi|120533478|gb|EH261611.1|EH261611
genomic: TCCTGATTATCAAGAAAGGATTGCCAGGCATGAAGCTGCTCACTTTTTGAgtactgcact ... ttcattctagTTGCTTATCTGCTTGGCCTACCCATTTTTGACTATTCACTGGATATTGGGA
EST: TCCTGATTATCAAGAAAGGATTGCCAGGCATGAAGCTGCTCACTTTTTGA TTGCTTATCTGCTTGGCCTACCCATTTTTGACTATTCACTGGATATTGGGA
genomic: TCCTGATTATCAAGAAAGGATTGCCAGGCATGAAGCTGCTCACTTTTTGAgtactgcact ... ttcattctagTTGCTTATCTGCTTGGCCTACCCATTTTTGACTATTCACTGGATATTGGGA
agatatgttactgtgctctaacccattttctgtttggtcttctgtttcattctagTTGCTTATCTGCTTGGCCTACCCATTTTTGACTATTCACTGGATATTGGGAAAGAGCATGTCAATCTCATTGATGAGAGGCTTGAAAAGCTTATCTATAG
ctctaac putative branch site (score: 2)
tcttctgtttcattct putative PPT
attttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgcacttttttttttgctgttttttttcgctcacaatgcatcagatatgttactgtgctctaacccattttctgtttggtcttctgtttcattctagTTGCTTATCTGCTTGGCCTACCCATTTTTGACTATTCACTGGATATTGGGAAAGAGCATGTCAATCTCATTGATGAGAGGCTTGAAAAGCTTATCTATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG