Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttttatttttagtcactcactctctttcaaattcaattggttctttatttgactcttcggtaattaatttattggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCTGAGATATTCATGGGCGGAAAGAACACAATTGTGTTGCACAACACTTGTG

Basic information

species Glycine max
transcript GLYMA08G14670.3
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os10g22450.1 (Oryza sativa), 3'ss of exon 7
-------gtaatttttatttttagtcactcactctctttcaaattcaattggttctttatttgact-----cttcggtaattaatttattggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCTGAGATATTCATGGGCGGAAAGAACACAATTGTGTTGCACAACACTTGTG
         ||| |            | | |  | |     |       ||| |  | |||||  |      |    | | |||||  |   | ||||||||| | || ||||||||||||||||||||||||||||| |||||| | || ||||| |||||||| || |||||||| || ||| |||||||||| || |
ctccgatagaatctgccagaccgaaaaattataccccgctgatgcacggtggctgatgatttggttgctgtttctattgagtaattgttaattgttgcagTATATTCCATACGTTGGGGACAGCAAGAGGGCCATGGACGAGTACACCTCGGAGATCTTCATGGGAGGGAAGAACACCATCGTGCTGCACAACACCTGCG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 7
----gtaatttttatttttagtcactcact-ctctttcaaattcaattggttctttattt-gactcttcggtaattaatttattggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCTGAGATATTCATGGGCGGAAAGAACACAATTGTGTTGCACAACACTTGTG
    | ||||| |   |  | ||     |  |  | |   ||| ||      |||  ||| |  |      |  |  || ||||  || |||||||||| || || ||||| |||||||||||||| ||||| |||||| | || ||||| |||||||| || |||| ||| || ||  |||||||||| ||||
gtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtccatgtattc-ttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCATCGTTCTGCACAACACCTGTG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G155242_T01 (Zea mays), 3'ss of exon 7
gtaatttttatttttagtcactcactctctttcaaattcaattggttctttatttgact-cttcggtaattaatttattggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCTGAGATATTCATGGGCGGAAAGAACACAATTGTGTTGCACAACACTTGTG
     | |  |   |  ||  |||| ||| || ||| |  |    | |          | | | |  | ||       |  | ||||||||||| || ||||| || |||||||||||||| ||||| |||||| | || ||||| ||||||||||| |||||||| || ||| |||||||||| ||||
----gtctgttagctgatctttcac-ctcgttaaaagttgacatatgcaaggcagatttacattgaaacttgtcactcttttgttgcagTATGTGCCGTACGTGGGAGACAGCAAGAGGGCTATGGACGAGTACACCTCAGAGATCTTCATGGGCGGCAAGAACACCATCGTGCTGCACAACACCTGTG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 7
------------gtaatttttatttttagtca-ctcactctctttcaaattcaattggttctttat-ttgactcttcggtaattaatttattggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCTGAGATATTCATGGGCGGAAAGAACACAATTGTGTTGCACAACACTTGTG
             |  |     | ||||   | ||  | |       | || ||  |    ||||  ||||  | |  |  | |  |||  ||    |||||||||| || || || || ||||| |||||||| ||||| |||||| | || ||||| ||||||||||| |||| ||| || ||| |||||||||| || |
gtctgttagctgatcttccacctctttaaaaagctggcacgtgcagcagtttaaacgtagatttacattgaaacct--gccactcctttgctg--catgcagTATGTGCCGTATGTGGGAGACAGTAAGAGGGCTATGGACGAGTACACATCAGAGATCTTCATGGGCGGCAAGAGCACCATCGTGCTGCACAACACCTGCG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G071174_T01 (Zea mays), 3'ss of exon 2
gtaatttttatttttagtcactcactctctttcaaattcaattggttctttatttgactcttcggtaattaatttattggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCTGAGATATTCATGGGCGGAAAGAACACAATTGTGTTGCACAACACTTGTG
||   |    |    | |  ||   | | |||   | | |    | |  ||  |  |   || | | | | ||   |   ||||||||||  | || ||||| || |||||||||||||| ||||| |||||  | |||||||| |||||||| || |||||||| || | | |||||||||| || |
gtgggtcg-gtcgacactagctagttgtgtttgtgactgatgctgcttcttgctcaaaggtt-gatgaatcatccctatattttgcagTACATCCCCTACGTGGGTGACAGCAAGAGGGCTATGGACGAGTATACCTCTGAGATCTTCATGGGTGGCAAGAACACCATCGCGCTGCACAACACCTGCG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G177461_T01 (Zea mays), 3'ss of exon 7
----------gtaatttttattt--ttagtcactcactctctttcaaat--tcaattggttctttatttgactcttcggtaa--ttaatttat-tggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCTGAGATATTCATGGGCGGAAAGAACACAATTGTGTTGCACAACACTTGTG
            | || || |||  || || ||| | ||| |  || ||   | | |   | |||  || | | ||    ||  || ||   | |  ||||||||||  | || || || || ||||||||||| |||||||| || ||  | || ||||| ||||||||||| |||||||| || ||| |||||||||| ||||
gtcggtcggtccacttgttgtttagtttgtgactgagtctatcccatatatgctacttcatgtttgattaattgttactcaaagttgatccctcttcttttgcagTACATCCCCTATGTGGGTGACAGCAAGAGAGCCATGGACGAATATACCTCCGAGATCTTCATGGGCGGCAAGAACACCATCGTGCTGCACAACACCTGTG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 6
lower sequence: AT5G10170.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaatttttatttttagtcactcactctctttcaaattcaattggttctttatttgactcttcggtaattaatttattggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCTGAGATATTCATGGGCGGAAAGAACACAATTGTGTTGCACAACACTTGTG
|| |||  | ||  || | | |   |   | || |||  ||    |     |  | |   |    ||    |||   |||| ||||||||||| || |  || || ||||||||||| || |||||||| ||| | || |||||||||||||| || |||||||| |||||| |||||||||||||||
gtgattaattttactattaatta--taattatccaatctaacaaatc----acattaacataaattatactattggatggtgttgcagTATGTGCCATGTGTAGGAGACAGCAAGAGAGCAATGGATGAATACACATCAGAGATATTCATGGGAGGGAAGAACACGATTGTGATGCACAACACTTGTG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 6
lower sequence: AT2G22240.1 (Arabidopsis thaliana), 3'ss of exon 5
---------gtaatttttatttttagtcactcactct--ctttcaaattcaattggttctttatttgactcttcggtaattaatttattggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCTGAGATATTCATGGGCGGAAAGAACACAATTGTGTTGCACAACACTTGTG
           |||          ||| |   | ||   |||||   || | |   || |  | |      | | |  |||  | |    |||||||||||||| || || |||| ||| || || || || |||||||||||| | ||||||||||||||||| || | |||||| || |||||||| ||||||||||
gtttgattttgaatcagaggccagagtgatcaattcctcctttctttttaagtacattttaaagtcttaaatcctgctattgttctgaatgttttgcagTATGTGCCATATGTTGCGGATAGTAAAAGAGCAATGGATGAGTACACGTCTGAGATATTCATGGGAGGGAGGAACACTATAGTGTTGCATAACACTTGTG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 6
lower sequence: AT4G39800.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaatttttatttttagtcactcactctctttcaaattcaattggttctttatttgactcttcggt--aattaatttattggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCTGAGATATTCATGGGCGGAAAGAACACAATTGTGTTGCACAACACTTGTG
|||| |   |      | ||  |||||     |   |||  ||||   | |      | | | | |  ||||  | | || |||||| |||||||||| || |||| ||| || ||| | |||||||| |||||| | || |||||||||||||| || ||||||||||||||| ||||||| || || |
gtaaatag-agaaccggacagacactcaaaacctgtttctgttggcaatctgag-atcccattgatccaatttgtgtgtttgttttgtagTATGTACCGTATGTTGCGGATAGTAAGCGAGCCATGGACGAGTACACATCAGAGATATTCATGGGAGGGAAGAACACAATTGTGATGCACAATACCTGCG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 6
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 7
----------gtaatttttatttttagtcactcactctctttcaaattcaa--ttgg--ttctttatt-tgactcttcggtaattaat----ttattggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCTGAGATATTCATGGGCGGAAAGAACACAATTGTGTTGCACAACACTTGTG
          | |   |   ||| |    |   | |    |||| || |    ||||  |  || ||| | |||       | |  |     || ||| | ||||||||||| || || ||||| || |||||||| ||||||||||||||| ||||||||||||||||||| || |||| ||| |||||| |||||||||| || |
gtatatcgcagaaccctccttttgtttgtatgtattacaattcagatgctggtttggactcattcattctcactggctaacattatacggtgttgttgatattgcagTATGTGCCATATGTTGGAGATAGCAAGAGAGCCATGGATGAGTACACTTCTGAGATATTCATGGGTGGGAAGAGCACCATTGTGCTGCACAACACCTGCG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 6
lower sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 6
------------------------------------------gtaatttttatttttagtc---actcactctctttcaaattca-attggttctttatttgactcttcggt--aattaatttattggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCTGAGATATTCATGGGCGGAAAGAACACAATTGTGTTGCACAACACTTGTG
                                          |  ||||    ||| | |    ||||    |  |    ||||| |  | ||||  | |   |   |      || | | | |  |  | ||||||| || ||||| || || |||||||||||||| ||||| |||||| |||| ||||| ||||||||||||   |||||||| ||  ||||||| || || |
gtattcttatctctactccagccctgcagtcaatgttttcaagccatttcggctttgatttcagactccaagttgtctgcattcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcagTACGTCCCTTATGTGGGTGACAGCAAGAGGGCAATGGACGAGTACACTTCGGAGATCTTCATGGGCGGACGTAACACAATCGTCATGCACAATACGTGCG

upper sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 6
lower sequence: EFJ37320 (Selaginella moellendorffii), 3'ss of exon 7
gtaatttttatttttagtcactcactctctttcaaattcaattggttctttatttg--actcttcggtaattaatttattggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCTGAGATATTCATGGGCGGAAAGAACACAATTGTGTTGCACAACACTTGTG
                             |   | |  |  ||| || |||  | |  |    ||   | ||   |  || |||||  ||||||| |||||||| || || |||||| |||||||||| || ||| | || |||||||||||||| || | || ||| || |   ||||||||||||| |
----------------------------gtaaaacaaacgcttgatttttttctagggaaaactcccgagtttgct--ttcgttttctagTATGTTCCTTACGTCGGTGATAGCAAGCGGGCCATGGACGAATACACGTCCGAGATATTCATGGGAGGCAGGAGCACCATCGCCATGCACAACACTTGCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10233961|gb|BE802849.1|BE802849
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|14999986|gb|BI320800.1|BI320800
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|14206199|gb|BG839877.1|BG839877
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|14011656|gb|BG726578.1|BG726578
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|5678158|gb|AI939288.1|AI939288
EST:     CCATCCTCTATGAGCCTNGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGCGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|10232086|gb|BE800974.1|BE800974
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|51337208|gb|CO981074.1|CO981074
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|20813067|gb|BQ297545.1|BQ297545
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGACTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|193379806|gb|FK345364.1|FK345364
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|15287268|gb|BI471159.1|BI471159
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|10231637|gb|BE800525.1|BE800525
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|26058223|gb|CA801137.1|CA801137
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|26059654|gb|CA802568.1|CA802568
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|31310622|gb|CD395825.1|CD395825
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|14259830|gb|BG882738.1|BG882738
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|15285683|gb|BI469574.1|BI469574
EST:     GGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: GGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|120494127|gb|EH222294.1|EH222294
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|120492592|gb|EH220759.1|EH220759
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|120494362|gb|EH222529.1|EH222529
EST:     GTTGTCATAAAG                         TATGTACCTTAC-TTTGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: GTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|151403113|gb|EV272923.1|EV272923
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|17519636|gb|BM188678.1|BM188678
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|9259624|gb|BE347771.1|BE347771
EST:     ATCCTCTATGAG-CTGGGTGAACAT-CGGNACCATGTGGTTGTCATTAAG                         TATGTACTTTACGTTGAGGACAGCTAGAGGGCCATGGATGAGTACTCTTCT
genomic: ATCCTCTATGAGCCT-GGTGAACATCCGG-ACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|10232107|gb|BE800995.1|BE800995
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|8402389|gb|BE058023.1|BE058023
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|120528740|gb|EH256874.1|EH256874
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|120493272|gb|EH221439.1|EH221439
EST:     TCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: TCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|120492384|gb|EH220551.1|EH220551
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|120492885|gb|EH221052.1|EH221052
EST:     CCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|15204497|gb|BI427265.1|BI427265
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|14206213|gb|BG839891.1|BG839891
EST:     CCATCCTCTATGAGCCTGG-GAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|20448975|gb|BQ253099.1|BQ253099
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|14011829|gb|BG726751.1|BG726751
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGTCTATGTGGTTGTCATTAAG                         TATTTTCCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|120492542|gb|EH220709.1|EH220709
EST:     CTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
EST: gi|10843347|gb|BF066650.1|BF066650
EST:     CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAG                         TATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT
genomic: CCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgtaattttta ... ggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattcaattggttctttatttgactcttcggtaattaatttattggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCTGAGATATTCATGGGCGGAAAGAACACAATTGTGTTGCACAACACTTGTG
                                 aattaat  putative branch site (score: 3)
                                taattaatttattggt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatttttatttttagtcactcactctctttcaaattcaattggttctttatttgactcttcggtaattaatttattggttttgcagTATGTACCTTACGTTGGGGACAGCAAGAGGGCCATGGATGAGTACTCTTCTGAGATATTCATGGGCGGAAAGAACACAATTGTGTTGCACAACACTTGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC