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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtacctgcatggagtctattctctgtcaaatttctgttcagattgttccaggaaatgttacacaaatgtgatattttctctccatttttgggttagttttaattaaatgttatataaaaaacaagtatctctgttgtagctgcacttacatgtgctttatttgaattaccagGTTTAAATAATCTCTACCCTGGCGATCTTATCCCCTTTACTAGGAAACCTCTTTTCTTAATTATTGACAGTGATAACAGCCATGCATTCAAGGCAG

Basic information

species Glycine max
transcript GLYMA08G14190.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14190.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv07s0191g00140.t01 (Vitis vinifera), 3'ss of exon 5
gtgagtacctgcatggagtctattctctgtcaaatttctgttcagattgttccaggaaatgttacacaaatgtgatattttctctccatttttgggttagttttaattaaatgttatataaaaaacaagtatctctgttgtagctgcacttac-atgtgcttta----tttgaattaccagGTTTAAATAAT---CTCTACCCTGGCGATCTTATCCCCTTTACTAGGAAACCTCTTTTCTTAATTATTGACAGTGATAACAGCCATGCATTCAAGGCAG
||  || |||   | || | ||| |  ||   | ||| |  |  ||  | |   |   || | |   ||| |    ||| |   || |  ||   ||   | |||  || ||| || | |   ||  |||  || | || |   |  ||| ||  | | |||||    ||    ||  |||||| |||||||   || |||||||| ||| | || || ||||| || | ||| |||||||| |||||||| ||||| ||||||||||||||||||    
gtaggtgcctatgttgaatttatgcgatgaatagtttttactgggaggggttt-gtgcatttaatctaaaagaataattgttcttctaggttgttgtccatgtta--tagatgataaaaatttaaggagttcctgttttatcattctactcactgtttcctttactctttccctttttcagGTTCAAATAATAACCTTTACCCTGGTGATATAATTCCTTTTACCAGAAGACCACTTTTCTTGATTATTGATAGTGACAACAGCCATGCATTCAAG----


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaacaagtatctctgttgtagctgcacttacatgtgctttatttgaattaccagGTTTAAATAATCTCTACCCTGGCGATCTTATCCCCTTTACTAGGAAACCTCTTTTCTTAATTATTGACAGTGATAACAGCCATGCATTCAAGGCAG
                         cacttac  putative branch site (score: 2)
                                      tttatttgaatta  TA-rich tract