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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcatctgttagtttctttttctttctgatgtataaacttctgtatgggtctttaaactagctcaattacttggaacagTTCTCAGAGAACTTTACAATAGTTCTATTTCATTATGATGGCCACACAACTGAATGGGATGAGTTTGAGTGGTCAAAGCGGGCAATTCATGTGAGTGTTC

Basic information

species Glycine max
transcript GLYMA08G14040.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14040.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G24570.1 (Arabidopsis thaliana), 3'ss of exon 5
gtcatctgttagtttctttttctttctgatgtataaacttctgtatgggtctttaaactagctcaattacttgga-acagTTCTCAGAGAACTTTACAATAGTTCTATTTCATTATGATGGCCACACAACTGAATGG---GATGAGTTTGAGTGGTCAAAGCGGGCAATTCATGTGAGTGTTC
||    || || |  |  ||| | | |  ||| |   |||     |       | |  |   |    ||||   | |||||| |||||||||||||| || ||||| |||||||||||||||   |||| || ||||   ||||||||||||||||| | |   ||||| ||  | ||||   
gttgattgata-taacactttttgttttctgtttttgcttaatagtaaactcatta--tgttttgtctactcaaatacagTTTTCAGAGAACTTTACTATTGTTCTGTTTCATTATGATGGCGTAACAAGTGCATGGAATGATGAGTTTGAGTGGTCGAGGAATGCAATACACATAAGTG---

upper sequence: GLYMA08G14040.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 6
gtcatctgttagtttctttttctttctgatgtataaacttctgtatgggtctttaaacta--gctcaattact-tggaacagTTCTCAGAGAACTTTACAATAGTTCTATTTCATTATGATGGCCACACAACTGAATGGGATGAGTTTGAGTGGTCAAAGCGGGCAATTCATGTGAGTGTTC
       |||  |||||    || ||   | |     || ||  ||  |||| |   ||    || |||  || | |  |||||||| ||| ||||||| ||  ||||||||||||||||||| |  ||||||||||||||||| ||||||||||||||| |||| ||||||||||| ||||
-------gttgatttctccccctctcctctctg----ctactaaatttgtctctcttctgctactaaatgtctgttgtgcagTTCTCTGAGGACTTTACCATCCTTCTATTTCATTATGATGGTCGAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTC

upper sequence: GLYMA08G14040.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s0187g00030.t01 (Vitis vinifera), 3'ss of exon 2
gtcatctgttagtttctttttctttctgatgtataaacttctgtatgggtctttaaactagctcaattact-tggaacagTTCTCAGAGAACTTTACAATAGTTCTATTTCATTATGATGGCCACACAACTGAATGGGATGAGTTTGAGTGGTCAAAGCGGGCAATTCATGTGAGTGTTC
       |||  |||||    || ||   | |   |     | | |   |||||   ||| || |||  || | |  |||||||| ||| ||||||| ||  ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| |||| ||||||||||| ||||
-------gttgatttctccccctctcctctctgctactaaatttgtctctcttttg-cta-ctaaatatctattgtgcagTTCTCTGAGGACTTTACCATCCTTCTATTTCATTATGATGGTCAAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgatgtataaacttctgtatgggtctttaaactagctcaattacttggaacagTTCTCAGAGAACTTTACAATAGTTCTATTTCATTATGATGGCCACACAACTGAATGGGATGAGTTTGAGTGGTCAAAGCGGGCAATTCATGTGAGTGTTC
 ttctgat  putative branch site (score: 3)
       tataaactt  TA-rich tract