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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattaagctgtctatatttctgtttaagattttttatcagtctttgcagtatgttgcaatcatgctacttctccgtatacatattatcaccatattacataactttagttcatttaattctgaaccagGGATTTTTCTACAGCTAATATGATAGGAGGGAAAGGTTTGAAGGGAAATTCCTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAG

Basic information

species Glycine max
transcript GLYMA08G13960.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13960.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G028307_T01 (Zea mays), 3'ss of exon 6
gtgattaagctgtctatatttctgtttaagattttttatcagtctttgcagtatgttgcaatcatgctacttctccgtatacatattatcaccatattacataactttagttcattta-attctgaac-cagGGATTTTTCTACAGCTAATATGATAGGAGGGAAAGGTTTGAAGGGAAATTCCTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAG
                        ||  |   |  | || ||| |||    ||  ||| ||  ||| ||  |  ||  ||| |||  | |    | || | ||  |||  | | |||  || ||  |  |||    ||  |||| ||||| | ||| || |  |  || |||   ||||  || ||||| || || |||||||| |||||||||||||| ||||||||| 
-----------------------attgcattatactcattagttttta---taccttgtaa--atg-tatgttgcctaataaataagaact---tgtttcgtactttttttccctttgcatactatatgcagTTCCTTCGCTACTGCTAAGAAGATTGGGGCCACTGGGTTGCGAGGAAGATCTTGGCCAGACTTAGACATGCTTCCATTTGGATGGCTTACTGATCCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtatacatattatcaccatattacataactttagttcatttaattctgaaccagGGATTTTTCTACAGCTAATATGATAGGAGGGAAAGGTTTGAAGGGAAATTCCTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAG
                  atattacataacttta  TA-rich tract