Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaactttgcttttaaaattgaaatggtgttgtttatggtttggtgaattgctatgtattcatccatgttggtcctaccatatctctgtcactgagtattttgctcctttgttttctttttccctagATTCATTGGTTCTCCATTTTTAACTCTTTCATGATGGTCATCTTCCTTACTGGATTGGTGTCAATGATATTGATGCGAACTCTGAGAAATGACTATGCAA

Basic information

species Glycine max
transcript GLYMA08G13370.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13370.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os12g07670.1 (Oryza sativa), 3'ss of exon 6
------------------------------------------gtacaacttt--gcttttaaaattgaaatggtgttgtttatggtttggtg-aattgctatgtattcatccatgttggtcctaccatatctctgtcactgagtattttgctcctttgtt--ttctttttccctagATTCATTGGTTCTCCATTTTTAACTCTTTCATGATGGTCATCTTCCTTACTGGATTGGTGTCAATGATATTGATGCGAACTCTGAGAAATGACTATGCAA
                                           | || || |  ||||    | ||        |      |  |||   || ||   |   |   | |  | | ||| || |     |  |   |||   ||  | |  || || ||    ||  |  |    |||||||||||||||||||||| || |||||||||||||| || ||||| ||||| ||||| ||||||||||||||||| ||  ||||||||||||||||||
gtaatattttcccactccaaagaaaaaaaaactatgcgtaacatgcagctctcagcttgcttacttatgtgaaagagaaaaaatgttaattgtaacaacagggagctgaatcgtcttgttctttttgaaagttgttca--aaggttctgacttctatgcaaatttctaatgttcagATTCATTGGTTCTCCATTTTCAATTCTTTCATGATGGTTATTTTCCTCACTGGTTTGGTTTCAATGATATTGATGCGGACATTGAGAAATGACTATGCAA

upper sequence: GLYMA08G13370.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os02g34690.1 (Oryza sativa), 3'ss of exon 6
--------------------------gtacaactttgcttttaaaattgaaatggtgttgtttatggtttggtgaattgctatgtattcatccatgttggtcctaccatatctctgtcactgagtattttgctcctt----tgttttctttttccctagATTCATTGGTTCTCCATTTTTAACTCTTTCATGATGGTCATCTTCCTTACTGGATTGGTGTCAATGATATTGATGCGAACTCTGAGAAATGACTATGCAA
                          |      | |||   |    |   |    | |||||     |||     ||    |  ||| | |  ||  |     | |||| | | | |  | |  | |  |    |      |  |   ||||     |||| ||||||||||| || || || |||||||||||||| ||||| || |||||  | ||||||||||| |||||||| ||||| ||||||||||||||||
gtaagaactcagtttctgcaattaaagcctggttctgcaccttggttcttatgtattttgttgccaattttccacataaaaaattatgccttgattctcaatttcccatgtatatcttgcagcatttcctctgaccacagataatccattttatggcagATCCATTGGTTCTCAATCTTCAATTCTTTCATGATGGTTATCTTTCTCACTGGGCTAGTGTCAATGATTTTGATGCGCACTCTAAGAAATGACTATGCAA

upper sequence: GLYMA08G13370.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os11g07910.1 (Oryza sativa), 3'ss of exon 6
-------------------------------------------gtacaactttgcttttaaaattgaaatggtgttgtttatggtttggtgaattgctatgtattcatccatgttggtcctaccatatctctgtcact-----gagtattttgctcctttgttttctttt-tccctagATTCATTGGTTCTCCATTTTTAACTCTTTCATGATGGTCATCTTCCTTACTGGATTGGTGTCAATGATATTGATGCGAACTCTGAGAAATGACTATGCAA
                                           | |||  |||  |  || |||| |  | |   |||    | ||||   || || ||    || ||     ||    ||  |       ||  | |     ||  | |  | ||   ||    |||   |    |||| |||||||||||||| || || || ||||||||||| || ||| | ||||||||||| ||||||||||||||| | || ||||||||||| ||||| |
gtaatctttgttcgaaccaacattactttttatgtcttttgctggacagtttttgtgctataatttactttgctctgtggtggttttgacaaagtggtagac-tttattttctttaaaactctcgaggaattgaaatttacaagaaaactaagttctgctgcaaccttccatgttcagATCCATTGGTTCTCCATCTTCAATTCGTTCATGATGGTTATTTTCTTGACTGGATTGGTATCAATGATATTGATGAGGACGCTGAGAAATGATTATGCGA

upper sequence: GLYMA08G13370.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G026231_T01 (Zea mays), 3'ss of exon 6
gtacaactttgcttttaaaattgaaatggtgttgtttatggtttggtgaattgcta---tgtattcatccatgttggtcctaccatatctctgtcactgagtattttgctcc-tttgttttctttttccctagATTCATTGGTTCTCCATTTTTAACTCTTTCATGATGGTCATCTTCCTTACTGGATTGGTGTCAATGATATTGATGCGAACTCTGAGAAATGACTATGCAA
                     ||| |   ||||            |  | || |||   | |||||| |  | |    |||   |  |  || | |   | |  |  ||||  ||  | ||  |  |    ||||||| |||||||||||||| ||||||||||||||||| || ||||| ||||| ||||| || |||||||||||||| ||| |||||||||| ||||| |
--------------------gtgatactttgtttgcagacaaccagaaactttctagtttctattcagctgtatcttcccttttaactaactattag-aaatcctaagctctgttcatatttctcattttcagATTCACTGGTTCTCCATTTTCAACTCTTTCATGATGGTTATTTTCCTAACTGGTTTGGTTTCGATGATATTGATGCGGACTTTGAGAAATGATTATGCCA

upper sequence: GLYMA08G13370.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G165631_T01 (Zea mays), 3'ss of exon 5
-----------gtacaactttgcttttaaaa------ttgaaatggtgttgtttatggtt----tggtgaattgctatgtattcatccatgttggt--cctaccatatctctgtca----ctgagtattttgctcct---------ttgttttctttttccctagATTCATTGGTTCTCCATTTTTAACTCTTTCATGATGGTCATCTTCCTTACTGGATTGGTGTCAATGATATTGATGCGAACTCTGAGAAATGACTATGCAA
            || |  |||||  ||||        ||| |     | |  |  |  ||    |   |||    |||  |||  | |   || |   | | | | || | ||  |    |||| |  | |  || |         || |||  | |      |||||||||||||||| ||||| || |||||||||||||| ||||| || |||||| | |||||||||||| ||||||| ||||| |||||||| |||||||
gtaatataggtatatatttttgcaattaaggagatctttgcagcttggctcctcgtaattacaatacagaaccagtata-attacttcccattagctgcgttctacatgtttgaaagagcctgaatcatatcttcttaatttctagttatttcttgtacttgcagATTCATTGGTTCTCAATTTTCAATTCTTTCATGATGGTTATCTTTCTCACTGGACTAGTGTCAATGATACTGATGCGGACTCTAAGAAATGATTATGCAA

upper sequence: GLYMA08G13370.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G420310_T01 (Zea mays), 3'ss of exon 6
gtacaactttgcttttaaaattgaaatggtgttgtttatggtttggtgaattgcta---tgtattcatccatgttggtcctaccatatctctgtcactgagtattttgctcc-tttgttttctttttccctagATTCATTGGTTCTCCATTTTTAACTCTTTCATGATGGTCATCTTCCTTACTGGATTGGTGTCAATGATATTGATGCGAACTCTGAGAAATGACTATGCAA
                     ||| |   ||||  |        |   | || |||   | | |||| |  |      |||   |  |  || | |   |||  |  ||||  ||  | ||  |  |  | ||||||| |||||||||||||| ||||||||||||||||| || ||||| ||||| ||||| || |||||||||||||| ||| ||||||| || ||||| |
--------------------gtgatactttgtttgtagacaaccgacaacttcctagtttctgttcagctgtaccttcccttttaactagctattag-aagtcctaagctctgttcatatttctcatttccagATTCACTGGTTCTCCATTTTCAACTCTTTCATGATGGTTATTTTCCTAACTGGTTTGGTTTCGATGATATTGATGCGGACTTTGAGAAACGATTATGCCA

upper sequence: GLYMA08G13370.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G087212_T01 (Zea mays), 3'ss of exon 6
gtacaactttgcttttaaaattgaaatggtgttgtttatggtttggtgaattgctatgtattcatccatgttggtcctaccatatctctg--tcactgagtattttgctcctttgttttctttttccctagATTCATTGGTTCTCCATTTTTAACTCTTTCATGATGGTCATCTTCCTTACTGGATTGGTGTCAATGATATTGATGCGAACTCTGAGAAATGACTATGCAA
                                  |||     || |    || ||  |   | |   |||| |  | | | || | ||||    | | |  |  | |||      |||| |   |   |||||||||||||||||||| || || || ||||||||||| || ||| | ||||| || |||||||||||||||||| | || || |||||||| |||||||
------------------------------acactttgccactttggtctttcctcggctctgactaatgtggaccttgctatctgtctgaagtaattacaagatggctgaccc-ttttttccatgtttagATTCATTGGTTCTCCATCTTCAATTCATTCATGATGGTTATTTTCTTGACTGGTTTAGTGTCAATGATATTGATGAGGACACTAAGAAATGATTATGCAA

upper sequence: GLYMA08G13370.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G10950.1 (Arabidopsis thaliana), 3'ss of exon 6
gtacaactttgcttttaaaattgaaatggtgttgtttatggtttggtgaattgctatgtattcatccatgttgg--tcctaccatatctctgtcactgagtattttgctcctttgttttctttttccctagATTCATTGGTTCTCCATTTTTAACTCTTTCATGATGGTCATCTTCCTTACTGGATTGGTGTCAATGATATTGATGCGAACTCTGAGAAATGACTATGCAA
                        |||  |  |    |   | |    || | |||| | | ||||  |    |  | ||     | || | |     ||  || ||    |||||| | |||      |||| || ||||||||||| |||||||| ||||||||||| || ||||| || || ||||| ||||||||||||||| | ||||| |||||||| ||||| |
----------------------ataattattcttccaagaatctaccaaagttctatat-tccatctcttcaagatttctgttcaagctttat----aagccttctgagagtttgttctttttgc----agATCCACTGGTTCTCCATCTTTAACTCGTTCATGATGGTTATTTTCCTCACCGGTTTGGTCTCAATGATATTGATGAGGACTCTCAGAAATGATTATGCGA

upper sequence: GLYMA08G13370.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv12s0035g00280.t01 (Vitis vinifera), 3'ss of exon 6
gtacaactttgcttttaaaattgaaatggtgttgtttatggtttggtgaattgctatgtattcatccatgttggtcctaccatatctctgtcactgagtattttgctcctttgttttctttttccctagATTCATTGGTTCTCCATTTTTAACTCTTTCATGATGGTCATCTTCCTTACTGGATTGGTGTCAATGATATTGATGCGAACTCTGAGAAATGACTATGCAA
              ||||   |    |  | || | ||||  ||    |||     | | |||||  |   |   | | ||| || |       ||| |   || || |  |||             ||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||| || |||||||| || |||||||||||||| |
--------------ttaaggattgtcttatattttatatgaattcaataatcttattttgttcatttaa--taaactt-ccacatattgagttgtgaatgcatt-ctgcaatgtgc-----------agATTCATTGGTTCTCCATTTTTAATTCTTTCATGATGGTTATCTTCCTCACTGGTTTGGTGTCAATGATCTTAATGCGAACCCTTAGAAATGACTATGCTA

upper sequence: GLYMA08G13370.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv18s0041g00680.t01 (Vitis vinifera), 3'ss of exon 6
gtacaactttgcttttaaaattgaaatggtgttgtttatggtttggtgaattgctatgtattcatccatgttggtcctaccatatctctgtcactgagtattttgctcctttgttttctttttccctagATTCATTGGTTCTCCATTTTTAACTCTTTCATGATGGTCATCTTCCTTACTGGATTGGTGTCAATGATATTGATGCGAACTCTGAGAAATGACTATGCAA
                     ||  | |  |   |  |    ||  ||||    |   |  |  | ||| ||| |   |   | | | | |  | | |  ||||        | |||   ||     |||| ||||||||||| || || || || ||||||||||| || ||||| |||||||||||||| |||||||| |||||||||||  ||||||| ||||| |
---------------------tgctaggaggaattcca----ttaatgaaaaatttcatgctacttcat-ttgat---attgtttttgtattccagtgctttttctaagcaagctttaacttggtgcagATCCATTGGTTCTCAATCTTCAATTCATTCATGATGGTTATTTTCCTCACTGGATTGGTGTCTATGATATTAATGCGAACTCTTCGAAATGATTATGCCA

upper sequence: GLYMA08G13370.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ15096 (Selaginella moellendorffii), 3'ss of exon 6
gtacaactttgcttttaaaattgaaatggtgttgtttatggtttggtgaattgctatgtattcatccatgttggtcctaccatatctctgtcactgagtattttgctcctttgttttctttttccctagATTCATTGGTTCTCCATTTTTAACTCTTTCATGATGGTCATCTTCCTTACTGGATTGGTGTCAATGATATTGATGCGAACTCTGAGAAATGACTATGCAA
                                                                     ||| ||  |    | ||| |||    |  ||   | || ||| ||  | | ||     ||||||| ||||| ||  | || ||||| |||||||||||||| || || |||||  ||||||| |||||| | ||| |||| |||| |||||||||||| |
---------------------------------------------------------------------gtttgttgttgtctgtctttgtacaagtttaaactcctgctt-gtggtatcttcgtgcagATTCACTGGTTTTCGCTCTTCAACTCGTTCATGATGGTCATATTTCTGACTGGCCTGGTGTCTATGATACTCATGAGAACGCTGAAAAATGACTATGCCA

upper sequence: GLYMA08G13370.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ37593 (Selaginella moellendorffii), 3'ss of exon 6
gtacaactttgcttttaaaattgaaatggtgttgtttatggtttggtgaattgctatgtattcatccatgttggtcctaccatatctctgtcactgagtattttgctcctttgttttctttttccctagATTCATTGGTTCTCCATTTTTAACTCTTTCATGATGGTCATCTTCCTTACTGGATTGGTGTCAATGATATTGATGCGAACTCTGAGAAATGACTATGCAA
                                                                     ||| ||  |    | ||| |||    |  ||   | || ||| ||  | | ||     ||||||| ||||| ||  | || ||||| |||||||||||||| || || |||||  ||||||| |||||| | ||| |||| |||| |||||||||||| |
---------------------------------------------------------------------gtttgttgtcgtctgtctttgtacaagtttaaactcctgctt-gtggtatcttcgtgcagATTCACTGGTTTTCGCTCTTCAACTCGTTCATGATGGTCATATTTCTGACTGGCCTGGTGTCTATGATACTCATGAGAACGCTGAAAAATGACTATGCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctaccatatctctgtcactgagtattttgctcctttgttttctttttccctagATTCATTGGTTCTCCATTTTTAACTCTTTCATGATGGTCATCTTCCTTACTGGATTGGTGTCAATGATATTGATGCGAACTCTGAGAAATGACTATGCAA
                        tattttgctcctttgt  CT-rich tract
                                   tttgttttcttttt  TA-rich tract