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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtacatcaaaatgtgtctattaagccatatattcatcctaataaattgtaattatgtgaactaaaaacagaagagagagagagagaagttgctttgtttctcttgcgttttgtctcaccttaacattttaattgttacagGTCACATCACTACTCTCCAATCATTCAATCAATTGATACTGTCACTAACATACTTTTCTCATCTGGAACCACAG

Basic information

species Glycine max
transcript GLYMA08G11980.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4405666|gb|AI507815.1|AI507815
EST:     TGCGATATATCATGGAAGGTTTTTCTTTCTTCTAGCAGACAGCATCCCAG                         GTCACATCACTACTCTCCAATCATTCAATCAATTGATACTGTCACTAACAT
genomic: TGCGATATATCATGGAAGGTTTTTCTTTCTTCTAGCAGACAGCATCCCAGgtaatgtaca ... attgttacagGTCACATCACTACTCTCCAATCATTCAATCAATTGATACTGTCACTAACAT
EST: gi|120533588|gb|EH261721.1|EH261721
EST:     TGCGATATATCATGGAAGGTTTTTCTTTCTTCTAGCAGACAGCATCCCAG                         GTCACATCACTACTCTCCAATCATTCAATCACTTGATACTGTCACTAACAT
genomic: TGCGATATATCATGGAAGGTTTTTCTTTCTTCTAGCAGACAGCATCCCAGgtaatgtaca ... attgttacagGTCACATCACTACTCTCCAATCATTCAATCAATTGATACTGTCACTAACAT
EST: gi|9901283|gb|BE610251.1|BE610251
EST:     TGCGATATATCATGGAAGGTTTTTCTTTCTTCTAGCAGACAGCATCCCAG                         GTCACATCACTACTCTCCAATCATTCAATCAATTGATACTGTCACTAACAT
genomic: TGCGATATATCATGGAAGGTTTTTCTTTCTTCTAGCAGACAGCATCCCAGgtaatgtaca ... attgttacagGTCACATCACTACTCTCCAATCATTCAATCAATTGATACTGTCACTAACAT
EST: gi|192295038|gb|FG986757.1|FG986757
EST:     TGCGATATATCATGGAAGGTTTTTCTTTCTTCTAGCAGACAGCATCCCAG                         GTCACATCACTACTCTCCAATCATTCAATCAATTGATACTGTCACTAACAT
genomic: TGCGATATATCATGGAAGGTTTTTCTTTCTTCTAGCAGACAGCATCCCAGgtaatgtaca ... attgttacagGTCACATCACTACTCTCCAATCATTCAATCAATTGATACTGTCACTAACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttgctttgtttctcttgcgttttgtctcaccttaacattttaattgttacagGTCACATCACTACTCTCCAATCATTCAATCAATTGATACTGTCACTAACATACTTTTCTCATCTGGAACCACAG
                                        ttttaat  putative branch site (score: 3)
                                  ttaacattttaattgt  TA-rich tract