1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...taagactgaatttgtctgtttgatttttctattttctgaatttcaaatgggtagtggacttgattcatccttctaatatatttgcttttcctgttgtcagTTTTCTGTTGTGTGGGGGCCCTTGCCATAACAGGGTCACTAGATCTTGTTGACAAAGACCTACTTGGTTGGTGGTTATGCGAGCGTCAGGTTAAATCTGG
species | Glycine max |
transcript | GLYMA08G11710.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGATGGTGGTTTTGGTTGCACTCCTGGTGGGGAATCTCATGCTGGTCAAA TTTTCTGTTGTGTGGGGGCCCTTGCCATAACAGGGTCACTAGATCTTGTTGEST: gi|151410609|gb|EV280424.1|EV280424
genomic: GGATGGTGGTTTTGGTTGCACTCCTGGTGGGGAATCTCATGCTGGTCAAAgtatgtcata ... ctgttgtcagTTTTCTGTTGTGTGGGGGCCCTTGCCATAACAGGGTCACTAGATCTTGTTG
EST: GGATGGTGGTTTTGGTTGCACTCCTGGTGGGGAATCTCATGCTGGTCAAA TTTTCTGTTGTGTGGGGGCCCTTGCCATAACAGGGTCACTAGATCTTGTTG
genomic: GGATGGTGGTTTTGGTTGCACTCCTGGTGGGGAATCTCATGCTGGTCAAAgtatgtcata ... ctgttgtcagTTTTCTGTTGTGTGGGGGCCCTTGCCATAACAGGGTCACTAGATCTTGTTG
aatgggtagtggacttgattcatccttctaatatatttgcttttcctgttgtcagTTTTCTGTTGTGTGGGGGCCCTTGCCATAACAGGGTCACTAGATCTTGTTGACAAAGACCTACTTGGTTGGTGGTTATGCGAGCGTCAGGTTAAATCTGG
ttctaat putative branch site (score: 2)
tttgcttttcctgtt putative PPT
taatatatttgctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagactgaatttgtctgtttgatttttctattttctgaatttcaaatgggtagtggacttgattcatccttctaatatatttgcttttcctgttgtcagTTTTCTGTTGTGTGGGGGCCCTTGCCATAACAGGGTCACTAGATCTTGTTGACAAAGACCTACTTGGTTGGTGGTTATGCGAGCGTCAGGTTAAATCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- -gactgaa
- - - - - - -gtctgtt
- - - - - - - - - - - - - - - - - - - - - - - - -ggtagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctttt