1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagcatatatcttactcttaaatggttagcttcaacaccgtcactgttctgacattcaagcttttgtggtttgcataaacaatctagTGGAATTCACTTTATAACAAGTGGAGGGGGATCAAAGGCATGGTCAGGCGATGTCAAGCCGTGGAAACTGGAAGAACTGAAGTTGTATTATGATGGGCAA
species | Glycine max |
transcript | GLYMA08G09910.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TACATAAATGGGCATGACCACTGCTTGCAGCACATAATTGACAATAATAA TGGAATTCACTTTATAACAAGTGGAGGGGGATCAAAGGCATGGTCAGGCGAEST: gi|254331559|gb|GR843516.1|GR843516
genomic: TACATAAATGGGCATGACCACTGCTTGCAGCACATAATTGACAATAATAAgtaagcatat ... aacaatctagTGGAATTCACTTTATAACAAGTGGAGGGGGATCAAAGGCATGGTCAGGCGA
EST: TACATAAATGGGCATGACCACTGCTTGCAGCACATAATTGACAATAATAA TGGAATTCACTTTATAACAAGTGGAGGGGGATCAAAGGCATGGTCAGGCGAEST: gi|57575598|gb|CX548573.1|CX548573
genomic: TACATAAATGGGCATGACCACTGCTTGCAGCACATAATTGACAATAATAAgtaagcatat ... aacaatctagTGGAATTCACTTTATAACAAGTGGAGGGGGATCAAAGGCATGGTCAGGCGA
EST: TACATAAATGGGCATGACCACTGCTTGCAGCACATAATTGACAATAATAA TGGAATTCACTTTATAACAAGTGGAGGGGGATCAAAGGCATGGTCAGGCGAEST: gi|12690302|gb|BG156638.1|BG156638
genomic: TACATAAATGGGCATGACCACTGCTTGCAGCACATAATTGACAATAATAAgtaagcatat ... aacaatctagTGGAATTCACTTTATAACAAGTGGAGGGGGATCAAAGGCATGGTCAGGCGA
EST: TACATAAATGGGCATGACCACTGCTTGCAGCACATAATTGACAATAATAA TGGAATTCACTTTATAACAAGTGGAGGGGGATCAAAGGCATGGTCAGGCGAEST: gi|192302904|gb|FG998586.1|FG998586
genomic: TACATAAATGGGCATGACCACTGCTTGCAGCACATAATTGACAATAATAAgtaagcatat ... aacaatctagTGGAATTCACTTTATAACAAGTGGAGGGGGATCAAAGGCATGGTCAGGCGA
EST: TACATAAATGGGCATGACCACTGCTTGCAGCACATAATTGACAATAATAA TGGAATTCACTTTATAACAAGTGGAGGGGGATCAAAGGCATGGTCAGGCGAEST: gi|254331758|gb|GR843608.1|GR843608
genomic: TACATAAATGGGCATGACCACTGCTTGCAGCACATAATTGACAATAATAAgtaagcatat ... aacaatctagTGGAATTCACTTTATAACAAGTGGAGGGGGATCAAAGGCATGGTCAGGCGA
EST: TACATAAATGGGCATGACCACTGCTTGCAGCACATAATTGACAATAATAA TGGAATTCACTTTATAACAAGTGGAGGGGGATCAAAGGCATGGTCAGGCGA
genomic: TACATAAATGGGCATGACCACTGCTTGCAGCACATAATTGACAATAATAAgtaagcatat ... aacaatctagTGGAATTCACTTTATAACAAGTGGAGGGGGATCAAAGGCATGGTCAGGCGA
caacaccgtcactgttctgacattcaagcttttgtggtttgcataaacaatctagTGGAATTCACTTTATAACAAGTGGAGGGGGATCAAAGGCATGGTCAGGCGATGTCAAGCCGTGGAAACTGGAAGAACTGAAGTTGTATTATGATGGGCAA
ttctgac putative branch site (score: 2)
ataaacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcatatatcttactcttaaatggttagcttcaacaccgtcactgttctgacattcaagcttttgtggtttgcataaacaatctagTGGAATTCACTTTATAACAAGTGGAGGGGGATCAAAGGCATGGTCAGGCGATGTCAAGCCGTGGAAACTGGAAGAACTGAAGTTGTATTATGATGGGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG