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gtaagatgtctaaacctttttcatgttctattagtactcgttttacttactatggacttatctctttgatatagGTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGGATGGCAGATTTATTATGGAGACTCCATACAGG
species | Glycine max |
transcript | GLYMA08G09170.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCTCGAGGCAGAACAG GTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGGATGGTAGAEST: gi|10235209|gb|BE804156.1|BE804156
genomic: CACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCTTGAGGCAGAACAGgtaagatgtc ... tttgatatagGTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGGATGGCAGA
EST: CACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCTTGAGGCAGAACAG GTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGGGATGG-AGEST: gi|254329705|gb|GR839258.1|GR839258
genomic: CACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCTTGAGGCAGAACAGgtaagatgtc ... tttgatatagGTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGG-ATGGCAG
EST: CACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCTCGAGGCAGAACAG GTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGGATGGTAGA
genomic: CACGCAAATTCTTTGAAAGTCATAAATTTTTTGGTCTTGAGGCAGAACAGgtaagatgtc ... tttgatatagGTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGGATGGCAGA
ttcatgttctattagtactcgttttacttactatggacttatctctttgatatagGTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGGATGGCAGATTTATTATGGAGACTCCATACAGG
cttatctcttt CT-rich tract
ttttactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatgtctaaacctttttcatgttctattagtactcgttttacttactatggacttatctctttgatatagGTTACCTTTTTCCAGCAAGGAACAATCCCTTGTGTTTCCAAGGATGGCAGATTTATTATGGAGACTCCATACAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA