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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgaagcatgatattttacccttgttttaactgtttatatagtatgatattaatatccttatgtttaatttaaatctatgtttgtgtatttgtattattatggttatgattaatatgacattctttgatattgtagGCCATATCTGCCATGGCTTGGGGAACAGAAACTTGTCCCAAG

Basic information

species Glycine max
transcript GLYMA08G08630.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209698125|gb|BW661068.1|BW661068
EST:     GTGCAAAGAAGGGTGGGGTGACTCACATCCTTAGAGCTGGAGGAGCTCAG                         GCCATATCTGCCATGGCTTGGGGAACAGAAACTTGTCCCAAGGTTGAG
genomic: GTGCAAAGAAGGGTGGGGTGACTCACATCCTTAGAGCTGGAGGAGCTCAGgtctgaagca ... gatattgtagGCCATATCTGCCATGGCTTGGGGAACAGAAACTTGTCCCAAGGTTGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgtatttgtattattatggttatgattaatatgacattctttgatattgtagGCCATATCTGCCATGGCTTGGGGAACAGAAACTTGTCCCAAG
                                       ttctttg  CT-rich tract
     tatttgtattattatg  TA-rich tract