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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atggttttaggtgttccccatgcatgagtccattgtgatatgtgagtgacactaaatatggataatgtaacttatcaagcatatatgcatatatttgtagCTTCTTGCAGAGAGAGGTGAGCTTCCTACAAGATTTGGCTCAGCAACTCTTGGAATACTTCTTTTGCAG

Basic information

species Glycine max
transcript GLYMA08G06890.3
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06890.3 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os12g42300.1 (Oryza sativa), 3'ss of exon 5
-----atggttttaggtgttccccatgcatgagtccattgtgatatgtgagtgacactaaatatggataatgtaacttatcaagcatatatgcatat-atttgtagCTTCTTGCAGAGAGAGGTGAGCTTCCTACAAGATTTGGCTCAGCAACTCTTGGAATACTTCTTTTGCAG
     || |||  ||   | |  | ||| |       ||||  |  || | |  |  || | ||   || ||  | || |  ||  | | || || | || || |||||||||| |||| |||||| || || ||||||||||||||||| || || ||||| || ||  |||||
atacaattgttcaagcaatacttcctgcttacagtagttgtatt--gtcact--ctttacacataattattg--atttttggagtgtttttggatgtcatatgcagCTTCTTGCTGAGAAAGGTGAACTCCCAACAAGATTTGGCTCAGCTACACTGGGAATCCTCCTCCTGCAG

upper sequence: GLYMA08G06890.3 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G009715_T01 (Zea mays), 3'ss of exon 5
-atggttttaggtgttccccatgcatgagtccattgtgatatgtgagtgacactaaatatggataatgtaacttatcaagcatatatgcatat-atttgtagCTTCTTGCAGAGAGAGGTGAGCTTCCTACAAGATTTGGCTCAGCAACTCTTGGAATACTTCTTTTGCAG
  | |||  |    |    || |||      |||  |  ||    ||| ||| |   ||    |  |   ||||    |     |||| |||  || || |||||||||| |||| |||||| ||||| ||||||||||| ||||| || || ||||| |||||  |||||
tttagttacacaaatcattcacgcaacttgtcatgct--tacaacagttacattttttaaaactttttgcacttggtgattgattatgaataccatctgcagCTTCTTGCCGAGAAAGGTGAACTTCCAACAAGATTTGGTTCAGCTACACTGGGAATTCTTCTCCTGCAG

upper sequence: GLYMA08G06890.3 (Glycine max), 3'ss of exon 6
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 3'ss of exon 6
-----------atggttttaggtgttccccatgcatgagtccattgtgatatgtgagtgacactaaat-atggataatgtaacttatcaagcatatatgcatatatttgtagCTTCTTGCAGAGAGAGGTGAGCTTCCTACAAGATTTGGCTCAGCAACTCTTGGAATACTTCTTTTGCAG
            | |   ||  | ||   |||  ||   |  | ||  |   | |||  | ||| ||| | | ||   |||  || | |   | | ||    | || | |||||||||||||||| ||||||||| |||||||||||||||||||||||  | ||||| |||||| | |||
gtattagcacagttgcaataacttttagtcatctatatctagaatggtaatggagaggcaaactcaatcaagaatttagtacattcttattgaca-attttgaaatgtatagCTTCTTGCAGAGAAAGGTGAGCTCCCTACAAGATTTGGCTCAGCAACCTTGGGAATTCTTCTTCTACAG

upper sequence: GLYMA08G06890.3 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 6
------atggttt-taggtgttccccatgcatgagtccattgtgatat-gtgagtgacactaaatatgg-ataatgtaacttatcaagcatatatgcatatatttgtagCTTCTTGCAGAGAGAGGTGAGCTTCCTACAAGATTTGGCTCAGCAACTCTTGGAATACTTCTTTTGCAG
      ||  | |  ||   || |       |  ||  |||   |||| |  |   | |||  |||| | |   |  | |||| |||||| |         || | |||||||||||||||| ||||||||| || ||| ||||||| ||||||||| | |||||||||||  | |||
gagtgaattatatgcagaaatttctttcttgtctgtagattagaatattgctacaaagacttgatatagcagtctagatcttaccaagcaca---------atatatagCTTCTTGCAGAGAAAGGTGAGCTCCCAACACGATTTGGTTCAGCAACTTTGGGAATACTTCTACTACAG

upper sequence: GLYMA08G06890.3 (Glycine max), 3'ss of exon 6
lower sequence: EFJ10924 (Selaginella moellendorffii), 3'ss of exon 5
atggttttaggtgttccccatgcatgagtccattgtgatatgtgagtgacactaaatatggataatgtaacttatcaagcatatatgcatatatttgtagCTTCTTGCAGAGAGAGGTGAGCTTCCTACAAGATTTGGCTCAGCAACTCTTGGAATACTTCTTTTGCAG
                                         ||  ||    | ||||     |    ||| || | |||          ||| |||| |||||||| ||||||  || || ||||| |||||||||||||| || || |||||||| ||||| || || 
-----------------------------------------gtttgttgtccaaaatgcttctttgttaatttgttaagtgc-----tgtatttttgcagCTTCTTTCAGAGAAGGGAGAACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTGTTTCAA

upper sequence: GLYMA08G06890.3 (Glycine max), 3'ss of exon 6
lower sequence: EFJ25893 (Selaginella moellendorffii), 3'ss of exon 5
atggttttaggtgttccccatgcatgagtccattgtgatatgtgagtgacactaaatatggataatgtaacttatcaagcatatatgcatatatttgtagCTTCTTGCAGAGAGAGGTGAGCTTCCTACAAGATTTGGCTCAGCAACTCTTGGAATACTTCTTTTGCAG
                                         ||  ||    | ||||     |    ||| || | |||          ||| |||| |||||||| ||||||  || || ||||| |||||||||||||| || || |||||||| ||||| || || 
-----------------------------------------gtttgttgtccaaaatgcttctttgttaatttgttaagtgc-----tgtatttttgcagCTTCTTTCAGAGAAGGGAGAACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgacactaaatatggataatgtaacttatcaagcatatatgcatatatttgtagCTTCTTGCAGAGAGAGGTGAGCTTCCTACAAGATTTGGCTCAGCAACTCTTGGAATACTTCTTTTGCAG
                                   atatatgcatatattt  TA-rich tract