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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaacagtatctgcttgttggtttctatgtttgtgcttgtgctgtggtgcatgagtgtatcttgatgcgtttgaaaatatatgtaagcaaatacttaggattgacacagcatttttctggttatgattagGCAGTCATGGAAAGCGAGGGTAAGGTTGGATGGGAAGAAATTGTGGACCCACAATTAAATGGAAAATATGATGTGCATAATCTTCATGACATGGCTTCAC

Basic information

species Glycine max
transcript GLYMA08G06620.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6913046|gb|AW394510.1|AW394510
EST:     CCACAGCAAGGGCTCATGGAATATGTAAAACTA                         GCAGTCATGGAAAGCGAGGGTAAGGTTGGATGGGAAGAAATTGTGGACCCA
genomic: CCACAGCAAGGGCTCATGGAATATGTAAAACTAgtaagaacag ... ttatgattagGCAGTCATGGAAAGCGAGGGTAAGGTTGGATGGGAAGAAATTGTGGACCCA
EST: gi|10845425|gb|BF071104.1|BF071104
EST:     TTATCACTGGCAGGAATCCACAGCAAGGGCTCATGGAATATGTAAAACTA                         GCAGTCATGGAAAGCGAGGGTAAGGTTGGATGGGAAGAAATTGTGGACCCA
genomic: TTATCACTGGCAGGAATCCACAGCAAGGGCTCATGGAATATGTAAAACTAgtaagaacag ... ttatgattagGCAGTCATGGAAAGCGAGGGTAAGGTTGGATGGGAAGAAATTGTGGACCCA
EST: gi|16345462|gb|BI971057.1|BI971057
EST:     TTATCACTGGCAGGAATCCACAGCAAGGGCTCATGGAATATGTAAAACTA                         GCAGTCATGGAAAGCGAGGGTAAGGTTGGATGGGAAGAAATTGTGGACCCA
genomic: TTATCACTGGCAGGAATCCACAGCAAGGGCTCATGGAATATGTAAAACTAgtaagaacag ... ttatgattagGCAGTCATGGAAAGCGAGGGTAAGGTTGGATGGGAAGAAATTGTGGACCCA
EST: gi|208026987|gb|GD826813.1|GD826813
EST:     ATCACTGGCAGGAATCCACAGCAAGGGCTCATGGAATATGTAAAACTA                         GCAGTCATGGAAAGCGAGGGTAAGGTTGGATGGGAAGAAATTGTGGACCCA
genomic: ATCACTGGCAGGAATCCACAGCAAGGGCTCATGGAATATGTAAAACTAgtaagaacag ... ttatgattagGCAGTCATGGAAAGCGAGGGTAAGGTTGGATGGGAAGAAATTGTGGACCCA
EST: gi|193664890|gb|FK611634.1|FK611634
EST:     TTATCACTGGCAGGAATCCACAGCAAGGGCTCATGGAATATGTAAAACTA                         GCGGTCATGGAAAGCGAGGGTAAGGTTGGATGGGAAGAAATTGTGGACCCA
genomic: TTATCACTGGCAGGAATCCACAGCAAGGGCTCATGGAATATGTAAAACTAgtaagaacag ... ttatgattagGCAGTCATGGAAAGCGAGGGTAAGGTTGGATGGGAAGAAATTGTGGACCCA
EST: gi|8283551|gb|BE021110.1|BE021110
EST:     TTATCACTGGCAGGAATCCACAGCAAGGGCTCATGGAATATGTAATACTA                         GCAGTCATGGAAAGCGAGGGTAATGTTGGATGGGAAGAAATTGTGGACCCA
genomic: TTATCACTGGCAGGAATCCACAGCAAGGGCTCATGGAATATGTAAAACTAgtaagaacag ... ttatgattagGCAGTCATGGAAAGCGAGGGTAAGGTTGGATGGGAAGAAATTGTGGACCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatatatgtaagcaaatacttaggattgacacagcatttttctggttatgattagGCAGTCATGGAAAGCGAGGGTAAGGTTGGATGGGAAGAAATTGTGGACCCACAATTAAATGGAAAATATGATGTGCATAATCTTCATGACATGGCTTCAC
                       gattgac  putative branch site (score: 3)
             aaatactta  TA-rich tract