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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtggtgtgctatttacttcatgatgtttaattttcatcttatctattctcattgcaaactcttctgaattgatgtgtgcagTCAATTACCATTCAGTGTTTGGAAGCTCTTCAGTTTTTGCATAGCCTTGGACTAATACACTGCGACTTGAAACCAGAGAATATTTTGGTTAAAAGCTATA

Basic information

species Glycine max
transcript GLYMA08G06160.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06160.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G73460.1 (Arabidopsis thaliana), 3'ss of exon 4
gtttgtggtgtgctatttacttcatgatgtttaattttcatcttatctattctcattgcaaactcttctgaattgatgtgtgcagTCAATTACCATTCAGTGTTTGGAAGCTCTTCAGTTTTTGCATAGCCTTGGACTAATACACTGCGACTTGAAACCAGAGAATATTTTGGTTAAAAGCTATA
|||||   |  ||| |   | | |  ||  |||||    || | ||  || |   ||  || |||||  | || | | ||| |||||||| || || |||||| | ||| | ||||| ||| | ||| |||||||||| |||||||| || ||||| || ||||| || ||||||||||| ||||
gtttg---tccgct-tcatcattaacattcttaatagatatgt-ataaatccgagttctaatctctttgggatcgttctgtacagTCAATCACTATCCAGTGTCTCGAATCACTTCAATTTCTACATGGCCTTGGACTTATACACTGTGATTTGAAGCCTGAGAACATATTGGTTAAAAGTTATA

upper sequence: GLYMA08G06160.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv01s0011g01590.t01 (Vitis vinifera), 3'ss of exon 10
gtttgtggtgtgctatttacttcatgatgtttaattttcatcttatctattctcat-tgcaaact-cttctgaattgatgtgtgcagTCAATTACCATTCAGTGTTTGGAAGCTCTTCAGTTTTTGCATAGCCTTGGACTAATACACTGCGACTTGAAACCAGAGAATATTTTGGTTAAAAGCTATA
  || ||| ||   ||||      |||| | |   | || |  |  | || ||  | || || || ||| | ||||| | ||||||||| ||||| |||||||||||||| || |||||||| |||||| |||| || || ||||| || ||  |||| || |||||||||||||| || |||||||
-gttatggagttacatttttaaactgatatctttctctcctactgac-atgctggtatgtaacctgcttttaaattgttctgtgcagTCCATTACAATTCAGTGTTTGGAGGCACTTCAGTTCTTGCATGGCCTAGGCCTTATACATTGTGATCTGAAGCCTGAGAATATTTTGGTGAAGAGCTATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaattttcatcttatctattctcattgcaaactcttctgaattgatgtgtgcagTCAATTACCATTCAGTGTTTGGAAGCTCTTCAGTTTTTGCATAGCCTTGGACTAATACACTGCGACTTGAAACCAGAGAATATTTTGGTTAAAAGCTATA
                                        aattgat  putative branch site (score: 4)
            ttatctatt  TA-rich tract