1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctcttgcataggaccatgctccaattaaaatatttggtttattattgtactttgtgatctacaattacatgctgatcattattatcattttatctttcagATGAGCTCCATTGATGCAGCCATAGATAAGAGGATTCTTGAGAGTAGGCTGGCTGGTCGTATGGCATTTTAGATCAATCTCATCCATACACTCTTGTCAA
species | Glycine max |
transcript | GLYMA08G05390.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAG ATGAGCTCCATTGATGCAGCCATAGATAAGAGGATTCTTGAGAGTAGGCTGEST: gi|192322566|gb|FK014687.1|FK014687
genomic: AAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGgtaagtcata ... tatctttcagATGAGCTCCATTGATGCAGCCATAGATAAGAGGATTCTTGAGAGTAGGCTG
EST: AAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAG ATGAGCTCCATTGATGCAGCCATAGATAAGAGGATTCTTGAGAGTAGGCTG
genomic: AAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGgtaagtcata ... tatctttcagATGAGCTCCATTGATGCAGCCATAGATAAGAGGATTCTTGAGAGTAGGCTG
tgtactttgtgatctacaattacatgctgatcattattatcattttatctttcagATGAGCTCCATTGATGCAGCCATAGATAAGAGGATTCTTGAGAGTAGGCTGGCTGGTCGTATGGCATTTTAGATCAATCTCATCCATACACTCTTGTCAA
tgctgat putative branch site (score: 3)
tcattttatctttc putative PPT
atcattattatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcttgcataggaccatgctccaattaaaatatttggtttattattgtactttgtgatctacaattacatgctgatcattattatcattttatctttcagATGAGCTCCATTGATGCAGCCATAGATAAGAGGATTCTTGAGAGTAGGCTGGCTGGTCGTATGGCATTTTAGATCAATCTCATCCATACACTCTTGTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
ctcttgc
- - - - - - - catgctc
- - - - - - - - - - - - - - - - - - - - - - - - -ctttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgct