Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggataaaataaaagcctaggccattcctatatttagtttacaacatttaagggacaatttttcatcttattattttatctcttttatgcagTCTCATGCTTCACAGATTCTTGGATTTAAGTTTCAATATTATCAACGCATGGAAGTCAACAGTCCTGTTCCATTTGGGCTCTATAGACTTACAGCCTTGC

Basic information

species Glycine max
transcript GLYMA08G05320.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G05320.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G24706.1 (Arabidopsis thaliana), 3'ss of exon 10
gtggataaaataaaagcctaggccattcctatatt-tagtttacaacatttaagggacaatttttcatcttattattttatctcttttatgcagTCTCATGCTTCACAGATTCTTGGATTTAAGTTTCAATATTATCAACGCATGGAAGTCAACAGTCCTGTTCCATTTGGGCTCTATAGACTTACAGCCTTGC
  |  |  |||     ||| |   |||  ||| || || |    | |  | ||| ||| ||||||   || |  |   ||  | |  | ||||||||||||||||||| |||||||||||||| || ||||| |||||  |  | || || || || ||||||||| ||||||||||||  |||||||||||||
--gtttggaatgtcttcctcg--tatttttatcttctaatgcttagc--tcaagagactattttttg-ctaaaaaaaataattttcatgtgcagTCTCATGCTTCACAAATTCTTGGATTTAAATTCCAATACTATCAGAGACTAGAGGTGAATAGCCCTGTTCCAGTTGGGCTCTATAAGCTTACAGCCTTGC

upper sequence: GLYMA08G05320.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv01s0011g06120.t01 (Vitis vinifera), 3'ss of exon 9
-------------------------------------------------------------------gtggataaaataaaagcctaggccattcctatatttagtttacaacatttaagggacaatttttcatcttatta-ttttatctcttttatgcagTCTCATGCTTCACAGATTCTTGGATTTAAGTTTCAATATTATCAACGCATGGAAGTCAACAGTCCTGTTCCATTTGGGCTCTATAGACTTACAGCCTTGC
                                                                    |  |||||| ||||   | | |  || | |    ||   |   | ||||    |   ||| |   | ||  || |||  | ||     | ||||||||||||||||| || ||||| ||||| |  ||||||||||| ||||||||||| || | || |||||||  ||||||||||   || ||||| ||||
gtatgaagttatgttgtcagtttccagtaccttgaagtgcctcttttcttttaatatatttctctttattcataaaaaaaaaatgttgtcagtttccag---taaactggtatattt----gtttattgtatgtattgctaatttcttttcaacctttcagTCTCATGCTTCACAAATACTTGGTTTTAAATACCAATATTATCAGCGCATGGAAGTTAATAATCGTGTTCCACCTGGGCTCTATCAGCTGACAGCTTTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttacaacatttaagggacaatttttcatcttattattttatctcttttatgcagTCTCATGCTTCACAGATTCTTGGATTTAAGTTTCAATATTATCAACGCATGGAAGTCAACAGTCCTGTTCCATTTGGGCTCTATAGACTTACAGCCTTGC
                     tttttcatcttattat  CT-rich tract
                 acaatttttcatctta  TA-rich tract