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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggcattcaaaagtagttgtttgttaatatagttgtacgcttgtttcactaatatggttcgctttgagattttagttttttttttttgttgatgctgttttcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAATGTGACACTTCCAAAGGGGACATATGTTAAGTTACAGCCTCACACAAAAG

Basic information

species Glycine max
transcript GLYMA08G05030.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G05030.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv03s0038g00750.t01 (Vitis vinifera), 3'ss of exon 6
gtaggcattcaaaagtagttgtttgtt----------------aatata----gttgtacgcttgtttcactaatatggttcgctttgagattttagttttttttttt-tgttgatgctgttttcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAATGTGACACTTCCAAAGGGGACATATGTTAAGTTACAGCCTCACACAAAAG
|||||||| |||||| | |||| |||                 || |||    | |||| |   |||| |||| |   | |  ||    |    |  ||  | || |  |  |  |  |  |||| | | ||||||||||| |||||||| ||||||||||| |||| |||  | |||||||||||||| ||||| ||||| |||||||| ||  ||||||| || |||| ||
gtaggcatccaaaagcatttgtctgtataagcctggtattgcaaacatattttgctgtaggtcagttttactactgcagatgtctccagggcactcattcctgttgtgatccttttaattgtttcctgt-cagATGATGGAAAACATGCTATTACAAGAGGGAGACACTGTGCAGGTGAAAAATGTGACTCTTCCGAAGGGAACATATGTAAAACTACAGCCCCATACAACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19269563|gb|BM885819.1|BM885819
EST:     GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTCAAAGTGAAAAAT
genomic: GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
EST: gi|13312371|gb|BG406022.1|BG406022
EST:     GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
genomic: GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
EST: gi|192296041|gb|FG993404.1|FG993404
EST:     GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
genomic: GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
EST: gi|37994740|gb|CF806346.1|CF806346
EST:     GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTCAAAGTGAAAAAT
genomic: GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
EST: gi|192325065|gb|FK016176.1|FK016176
EST:     GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAGAGTGAAAAAT
genomic: GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
EST: gi|15816027|gb|BI788302.1|BI788302
EST:     GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTCAAAGTGAAAAAT
genomic: GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
EST: gi|254326846|gb|GR836455.1|GR836455
EST:     GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
genomic: GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
EST: gi|209716428|gb|BW653869.1|BW653869
EST:     GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
genomic: GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
EST: gi|16996631|gb|BM086003.1|BM086003
EST:     GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTCAAAGTGAAAAAT
genomic: GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
EST: gi|209712046|gb|BW674191.1|BW674191
EST:     GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
genomic: GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
EST: gi|192309316|gb|FK000524.1|FK000524
EST:     GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTCAAAGTGAAAAAT
genomic: GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
EST: gi|16348528|gb|BI974123.1|BI974123
EST:     ATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
genomic: ATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
EST: gi|192326508|gb|FK018815.1|FK018815
EST:     GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
genomic: GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
EST: gi|254313714|gb|GR831343.1|GR831343
EST:     GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
genomic: GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
EST: gi|298172847|gb|HO019831.1|HO019831
EST:     GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
genomic: GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
EST: gi|17153552|gb|BM143485.1|BM143485
EST:     GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTCAAAGTGAAAAAT
genomic: GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
EST: gi|4304277|gb|AI443596.1|AI443596
EST:     GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTNTTACAAGAGGGGGACATTGTCAAAGTGAAAAAT
genomic: GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
EST: gi|213604953|gb|DB956328.1|DB956328
EST:     GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
genomic: GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
EST: gi|192330755|gb|FK022018.1|FK022018
EST:     GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
genomic: GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
EST: gi|24205916|gb|BU965169.1|BU965169
EST:     GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTCAAAGTGAAAAAT
genomic: GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
EST: gi|213599556|gb|DB968353.1|DB968353
EST:     GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
genomic: GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT
EST: gi|23727320|gb|BU761687.1|BU761687
EST:     GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGG                         ATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTCAAAGTGAAAAAT
genomic: GGGTTCTGGAGTTCATTGCTGAGGAAGGCATGATATACATGCCATACTGGgtaggcattc ... tcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttcgctttgagattttagttttttttttttgttgatgctgttttcatatacagATGATGGAGAACATGCTTTTACAAGAGGGGGACATTGTTAAAGTGAAAAATGTGACACTTCCAAAGGGGACATATGTTAAGTTACAGCCTCACACAAAAG
                               tgttgat  putative branch site (score: 4)
                                       ctgttttc  CT-rich tract
       tttgagattttagttt  TA-rich tract