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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttctagttaatcaatgtgtagcaaaattattttacaatcacaaatcctttcactttaaaattcaccgtgacattaacatatttcattcagTGGCAGTAATTAATTTATATGAATCAAACTCTATAGGTGAAACCTTGGAGGAATTTCCAAACAATCATCAGGCATCACTAATAGCATATGATCAGAATGA

Basic information

species Glycine max
transcript GLYMA08G04920.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120494225|gb|EH222392.1|EH222392
EST:     CTTGGAAGAAATTGATGCGGCTCTGTTAACCCAAG                         TGGCAGTAATTAATTTATATGAATCAAACTCTATAGGTGAAACCTTGGAGG
genomic: CTTGGAAGAAATTGATGCGGCTCTGTTAACCCAAGgtatgttcta ... tttcattcagTGGCAGTAATTAATTTATATGAATCAAACTCTATAGGTGAAACCTTGGAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcacaaatcctttcactttaaaattcaccgtgacattaacatatttcattcagTGGCAGTAATTAATTTATATGAATCAAACTCTATAGGTGAAACCTTGGAGGAATTTCCAAACAATCATCAGGCATCACTAATAGCATATGATCAGAATGA
                                   cattaac  putative branch site (score: 2)
                                             tttcattc  putative PPT
                                    attaacatatttcatt  TA-rich tract