1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aatcgtactactattattgttattatgatgattttataattttgctacaagagtagtaatgttcaaataatgtgagtgcacgtggcttttcatttactagGTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGATATGGTGCACGCTACCCGCAGAGAATACACCACCGGGCCAGCTCGCTTC
species | Glycine max |
transcript | GLYMA08G04840.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCGAGACTAGTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAG GTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGAEST: gi|192303569|gb|FG995947.1|FG995947
genomic: GCGAGACTAGTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAGgtaagaaaca ... catttactagGTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGA
EST: GCGAGACTAGTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAG GTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGAEST: gi|298195045|gb|HO043573.1|HO043573
genomic: GCGAGACTAGTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAGgtaagaaaca ... catttactagGTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGA
EST: GCGAGACTAGTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAG GTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGAEST: gi|51335328|gb|CO979194.1|CO979194
genomic: GCGAGACTAGTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAGgtaagaaaca ... catttactagGTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGA
EST: GCGAGACTAGTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAG GTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGAEST: gi|192303570|gb|FG995948.1|FG995948
genomic: GCGAGACTAGTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAGgtaagaaaca ... catttactagGTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGA
EST: GCGAGACTAGTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAG GTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGA
genomic: GCGAGACTAGTGCCACCCCAGCTTTACTCAAACACCTTGCTAAACGCCAGgtaagaaaca ... catttactagGTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGA
tacaagagtagtaatgttcaaataatgtgagtgcacgtggcttttcatttactagGTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGATATGGTGCACGCTACCCGCAGAGAATACACCACCGGGCCAGCTCGCTTC
cttttcattt CT-rich tract
taatgttcaaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcgtactactattattgttattatgatgattttataattttgctacaagagtagtaatgttcaaataatgtgagtgcacgtggcttttcatttactagGTGGATTACATTCTTGGGGACAATCCATTGGGAATGTCGTACATGGTTGGATATGGTGCACGCTACCCGCAGAGAATACACCACCGGGCCAGCTCGCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - -tgatgat
- - - - - - - - - - - - - - - - - - - - - tgctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcacgt