Sequence
atgc intronic sequence ATGC exonic sequencegtctaacttaaaatttgttcattgttctttttttaagtgattaattagaattattatggtttcacttccctgaattattttattatggtcttaactgctttgatgcttagcagATATTTATTCAAACTGGATACCCTCTCGATCTGCCATCTGGAAGCCTGGGAAGTTACTGCATCTATGAATACCATATG
Basic information
species | Glycine max |
transcript | GLYMA08G03760.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G03760.1 (Glycine max), 3'ss of exon 6
lower sequence: AT2G19880.1 (Arabidopsis thaliana), 3'ss of exon 6
------------------------------gtctaacttaaaatt-tgttcattgttctttttttaagtgattaattagaatta-ttatggtttcacttccctgaattattttattatggtct-taactgctttgatgcttagcagATATTTATTCAAACTGGATACCCTCTCGATCTGCCATCTGGAAGCCTGGGAAGTTACTGCATCTATGAATACCATATG
| ||||| | ||| || ||| | ||| || | || || | || ||| ||| | | | | | || | | | |||| | ||||||||||||||||||||| || ||||| || |||| ||||| | || || ||||| ||||||||||| ||||| |||
gtggtacccaaactacagaaatcctgaactaattggcttaattctgtgtctgtttacatttatcaaagacatagctaaggataggcccttaattatctttcctt--ctgtctgaatttgtttaacagatatagtgatttcttgcagATATTTATTCAAACTGGGTATCCTCTAGACTTGCCGTCTGGGACTCTTGGGAGTTATTGCATCTATGAGTACCACATG
upper sequence: GLYMA08G03760.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv11s0016g03130.t01 (Vitis vinifera), 3'ss of exon 6
-----------------------------------------------------------gtctaacttaaaatttgttca----ttgttctttttttaagtgattaattagaattat------tatggtttcacttccctgaattattttattatggtcttaactgctttgatgcttagcagATATTTATTCAAACTGGATACCCTCTCGATCTGCCATCTGGAAGCCTGGGAAGTTACTGCATCTATGAATACCATATG
||| || | |||| ||| |||| |||||||| || || ||| ||| | || | || | | |||| || | ||||||| | | | || | | |||||||||||||||||| ||||| ||||| ||| |||| |||||||| | |||||||||||||| || ||||| ||||||
gtgtatttatgcacataaactaccatgccttttatctatgtaacttgcatttttatctaatcttgtttgatattttttccccttttgtgttttttttatatgtgtacttatgattttggttggcattgattggaattctggaatgcccttttaatggtctgattttgctggagacgt-gcagATATTTATTCAAACCGGATATCCTCTTGATTTGCCTTCTGGAAGTTTAGGAAGTTACTGCATTTACGAATATCATATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttcacttccctgaattattttattatggtcttaactgctttgatgcttagcagATATTTATTCAAACTGGATACCCTCTCGATCTGCCATCTGGAAGCCTGGGAAGTTACTGCATCTATGAATACCATATG
aattattttattatgg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtctaacttaaaatttgttcattgttctttttttaagtgattaattagaattattatggtttcacttccctgaattattttattatggtcttaactgctttgatgcttagcagATATTTATTCAAACTGGATACCCTCTCGATCTGCCATCTGGAAGCCTGGGAAGTTACTGCATCTATGAATACCATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG