1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtataaccaaatcatttttgtgtgtccccttccttctacaaggctactgattcaatgcagctactgtagtacttttttttggtaattatttctttcctcggcatttggattttttaattgttgcttgtgttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCCTCTGGGGATGCAGTACTTATAACCAAAGCTGATCTTGAAGGCTATCATA
species | Glycine max |
transcript | GLYMA08G03600.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAG GCTGTTCAAAACTATGACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCCEST: gi|193433345|gb|FK395311.1|FK395311
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTTGCCATACTCCCCEST: gi|193533066|gb|FK493670.1|FK493670
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTT-GCCATACTCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCCEST: gi|193333104|gb|FK299954.1|FK299954
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAG GCTGTTACAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCEST: gi|207825425|gb|GD800538.1|GD800538
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTT-CAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCCEST: gi|208024143|gb|GD824207.1|GD824207
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAG GCTGTTCAAAACTGTAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCCEST: gi|193345414|gb|FK309199.1|FK309199
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCACCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCCEST: gi|192295656|gb|FG990510.1|FG990510
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCCEST: gi|193578968|gb|FK535820.1|FK535820
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAG GCTGTTACAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCEST: gi|207832678|gb|GD803494.1|GD803494
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTT-CAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAG GCTGTTCAAAACTEST: gi|207819140|gb|GD793274.1|GD793274
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACT
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCAEST: gi|19453452|gb|BM954862.1|BM954862
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCA
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCCEST: gi|207684113|gb|GD667502.1|GD667502
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAG GCTGTTACAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCEST: gi|193521731|gb|FK479504.1|FK479504
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTT-CAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAG GCTGTTACAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCEST: gi|10254074|gb|BE821840.1|BE821840
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTT-CAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCC
EST: ATGTTCGGNCTCGAAGANNTAGAGTGCTACTAGCACCATCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCCEST: gi|208056897|gb|GD854674.1|GD854674
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCC
EST: TTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAG GCTGTTACAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCEST: gi|207824934|gb|GD796828.1|GD796828
genomic: TTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTT-CAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCC
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCC
attatttctttcctcggcatttggattttttaattgttgcttgtgttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCCTCTGGGGATGCAGTACTTATAACCAAAGCTGATCTTGAAGGCTATCATA
ttttaat putative branch site (score: 3)
atttggattttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataaccaaatcatttttgtgtgtccccttccttctacaaggctactgattcaatgcagctactgtagtacttttttttggtaattatttctttcctcggcatttggattttttaattgttgcttgtgttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTGCCATACTCCCCCTCTGGGGATGCAGTACTTATAACCAAAGCTGATCTTGAAGGCTATCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG