1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttcccccccccccccccccaaaaaaaaaaaaaaaaaactgtattcaattgattgttcctaaattgtatcaccttaacattcttggttttatcacatgcagATCTCAATGTTCTGAATGAATATCCACAAGTTCATTCAATTTCAGCATTCAACAATATTTACAATGGCACTGGTATTTTTGGTATCCAAGTTACAACA
species | Glycine max |
transcript | GLYMA08G03580.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGGTAAAGGGATGTATTCACGGCTAT ATCTCAATGTTCTGAATGAATATCCACAAGTTCATTCAATTTCAGCATTCAEST: gi|254325529|gb|GR838410.1|GR838410
genomic: CTGGTAAAGGGATGTATTCACGGCTATgtaagttatc ... tcacatgcagATCTCAATGTTCTGAATGAATATCCACAAGTTCATTCAATTTCAGCATTCA
EST: CTGGTAAAGGGATGTATTCACGGCTAT ATCTCAATGTTCTGAATGAATATCCACAAGTTCATTCAATTTCAGCATTCAEST: gi|20075700|gb|BQ094475.1|BQ094475
genomic: CTGGTAAAGGGATGTATTCACGGCTATgtaagttatc ... tcacatgcagATCTCAATGTTCTGAATGAATATCCACAAGTTCATTCAATTTCAGCATTCA
EST: TGGATCATTCTCAGCTGGTGGACCTGGTAAAGGGATGTATTCACGGCTAT ATCTCAATGTTCTGAATGAATATCCACAAGTTCATTCAATTTCAGCATTCAEST: gi|8826321|gb|BE210051.1|BE210051
genomic: TGGATCATTCTCAGCTGGTGGACCTGGTAAAGGGATGTATTCACGGCTATgtaagttatc ... tcacatgcagATCTCAATGTTCTGAATGAATATCCACAAGTTCATTCAATTTCAGCATTCA
EST: TGGATCATTCTCAGCTGGTGGACCTGGTAAAGGGATGTATTCACGGCTAT ATCTCAATGTTCTGAATGAATATCCACAAGTTCATTCAATTTCAGCATTCA
genomic: TGGATCATTCTCAGCTGGTGGACCTGGTAAAGGGATGTATTCACGGCTATgtaagttatc ... tcacatgcagATCTCAATGTTCTGAATGAATATCCACAAGTTCATTCAATTTCAGCATTCA
aattgattgttcctaaattgtatcaccttaacattcttggttttatcacatgcagATCTCAATGTTCTGAATGAATATCCACAAGTTCATTCAATTTCAGCATTCAACAATATTTACAATGGCACTGGTATTTTTGGTATCCAAGTTACAACA
ttttatc CT-rich tract
taaattgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcccccccccccccccccaaaaaaaaaaaaaaaaaactgtattcaattgattgttcctaaattgtatcaccttaacattcttggttttatcacatgcagATCTCAATGTTCTGAATGAATATCCACAAGTTCATTCAATTTCAGCATTCAACAATATTTACAATGGCACTGGTATTTTTGGTATCCAAGTTACAACA
- ccccccc
- - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - tgtattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttaac