1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaacctcctgaaccagaaattcatcctatcctattaatcatatgttacattgtgtaacttttgttgattcccacaagatcttaatattaagtgtctaattttctcacttttccgcagAACTTGGAGGCTAGTGTTACAATTGACACTGTCCCTAACGTTAAGAAGAAGCATGAAGTTAATGTTG
species | Glycine max |
transcript | GLYMA08G02850.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTATCAAAGCCATAACAACTGGCTGGTTGCATCCAAGCATTAACCTAGAT AACTTGGAGGCTAGTGTTACAATTGACACTGTCCCTAACGTTAAGAAGAAGEST: gi|58018638|gb|CX705380.1|CX705380
genomic: CTATCAAAGCCATAACAACTGGCTGGTTGCATCCAAGCATTAACCTAGATgtaacctcct ... ttttccgcagAACTTGGAGGCTAGTGTTACAATTGACACTGTCCCTAACGTTAAGAAGAAG
EST: CTATCAAAGCCATAACAACTGGCTGGTTGCATCCAAGCATTAACCTAGAT AACTTGGAGGCTAGTGTTACAATTGACACTGTCCCTAACGTTAAGAAGAAG
genomic: CTATCAAAGCCATAACAACTGGCTGGTTGCATCCAAGCATTAACCTAGATgtaacctcct ... ttttccgcagAACTTGGAGGCTAGTGTTACAATTGACACTGTCCCTAACGTTAAGAAGAAG
gttgattcccacaagatcttaatattaagtgtctaattttctcacttttccgcagAACTTGGAGGCTAGTGTTACAATTGACACTGTCCCTAACGTTAAGAAGAAGCATGAAGTTAATGTTG
ttctcac putative branch site (score: 2)
ttttctcacttttccg CT-rich tract
ttaatattaagtgtct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacctcctgaaccagaaattcatcctatcctattaatcatatgttacattgtgtaacttttgttgattcccacaagatcttaatattaagtgtctaattttctcacttttccgcagAACTTGGAGGCTAGTGTTACAATTGACACTGTCCCTAACGTTAAGAAGAAGCATGAAGTTAATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC