1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttttttcttctctatcaattgttctagtccttttgttttacattccagtactttagttgatgctaatccacccaagcaatgttgcagAAAACAAAACAGAACCGCCAGAAGAAGAAACAGAACAAGGATGACAAGAATTCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCA
species | Glycine max |
transcript | GLYMA08G02550.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAG AAAACGAA-CAGAACCGEST: gi|193621118|gb|FK570410.1|FK570410
genomic: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGgttttttctt ... aatgttgcagAAAACAAAACAGAACCG
EST: AGCATTGCAAACTGCTTAAGAAGAAGGAGAAA-CTGAAAATATAATCAAG AAAACAAAACAGAACCGEST: gi|208241159|gb|GE041837.1|GE041837
genomic: AGCATTGCAA-CTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGgttttttctt ... aatgttgcagAAAACAAAACAGAACCG
EST: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAG AAAACAAAACAGEST: gi|193412757|gb|FK378646.1|FK378646
genomic: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGgttttttctt ... aatgttgcagAAAACAAAACAG
EST: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAG AAAACAAAACAGAACCGCCAGEST: gi|208055455|gb|GD853248.1|GD853248
genomic: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGgttttttctt ... aatgttgcagAAAACAAAACAGAACCGCCAG
EST: AAGCATTGCAACTGCTTAAGAAGAAGGNGAAAACTGAAAATATAATCAAG AAAACAAAACAGAACCGCCAGAAGAAEST: gi|207713118|gb|GD694666.1|GD694666
genomic: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGgttttttctt ... aatgttgcagAAAACAAAACAGAACCGCCAGAAGAA
EST: GCATTGCAACTGACTTAAAGAAGAAGGAGAAAACTGAAAATATAATCAAG AAAACAAAACAGAACCGCCEST: gi|207772050|gb|GD743511.1|GD743511
genomic: GCATTGCAACTG-CTTAA-GAAGAAGGAGAAAACTGAAAATATAATCAAGgttttttctt ... aatgttgcagAAAACAAAACAGAACCGCC
EST: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAG AAA-CAAAACAEST: gi|193579812|gb|FK536413.1|FK536413
genomic: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGgttttttctt ... aatgttgcagAAAACAAAACA
EST: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAG AAAACAAAACNGAACCGCCEST: gi|193655124|gb|FK598752.1|FK598752
genomic: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGgttttttctt ... aatgttgcagAAAACAAAACAGAACCGCC
EST: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAG AAAACAAAACAGAACCGCCAGAAGAAGGAACAGAACAAGGATEST: gi|193600843|gb|FK550380.1|FK550380
genomic: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGgttttttctt ... aatgttgcagAAAACAAAACAGAACCGCCAGAAGAAGAAACAGAACAAGGAT
EST: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAG AAAACAAAACAGAACCGCCEST: gi|208272816|gb|GE072286.1|GE072286
genomic: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGgttttttctt ... aatgttgcagAAAACAAAACAGAACCGCC
EST: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAG AAAACAAAACAGAACCGCCAGAAGEST: gi|208037422|gb|GD835323.1|GD835323
genomic: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGgttttttctt ... aatgttgcagAAAACAAAACAGAACCGCCAGAAG
EST: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAG AAAACAAAACAGAACCGEST: gi|193470278|gb|FK438865.1|FK438865
genomic: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGgttttttctt ... aatgttgcagAAAACAAAACAGAACCG
EST: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAG AAAACAAAACAGAAEST: gi|208229004|gb|GE024326.1|GE024326
genomic: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGgttttttctt ... aatgttgcagAAAACAAAACAGAA
EST: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAG AAAACAAAACAGAACCGCCEST: gi|193529626|gb|FK484859.1|FK484859
genomic: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGgttttttctt ... aatgttgcagAAAACAAAACAGAACCGCC
EST: CTGAAAGTATAATCAAG AAAACAAAACAGAACCGCCAGAAGAAGAAACAGAACAAGGATGACAAGAATEST: gi|208162493|gb|GD963182.1|GD963182
genomic: CTGAAAATATAATCAAGgttttttctt ... aatgttgcagAAAACAAAACAGAACCGCCAGAAGAAGAAACAGAACAAGGATGACAAGAAT
EST: AATATAATCAAG AAAACAAAACAGAACCGCCAGAAGAAGAAACAGAACAAGGATGACAAGAATEST: gi|208290186|gb|GE082278.1|GE082278
genomic: AATATAATCAAGgttttttctt ... aatgttgcagAAAACAAAACAGAACCGCCAGAAGAAGAAACAGAACAAGGATGACAAGAAT
EST: AGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATACAAG AAAACAAAACAGEST: gi|207778684|gb|GD749429.1|GD749429
genomic: AGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAAT-CAAGgttttttctt ... aatgttgcagAAAACAAAACAG
EST: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAG AAAACAAAACAGEST: gi|208023000|gb|GD821010.1|GD821010
genomic: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGgttttttctt ... aatgttgcagAAAACAAAACAG
EST: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAG AAAACAAA-CAGAACCGCCEST: gi|208173057|gb|GD967588.1|GD967588
genomic: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGgttttttctt ... aatgttgcagAAAACAAAACAGAACCGCC
EST: AACTGAAAATATAATTCAAG AAAACAAAACAGAACCGCCAGAAGAAGAAACAGAACAAGGATGACAAGAAEST: gi|208228809|gb|GE024229.1|GE024229
genomic: AACTGAAAATATAA-TCAAGgttttttctt ... aatgttgcagAAAACAAAACAGAACCGCCAGAAGAAGAAACAGAACAAGGATGACAAGAA
EST: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAG AAAACAAAACAGAACCGCCAGAAGAAEST: gi|207772279|gb|GD746484.1|GD746484
genomic: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGgttttttctt ... aatgttgcagAAAACAAAACAGAACCGCCAGAAGAA
EST: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAG AAAACAAAACAGAACCG
genomic: AAGCATTGCAACTGCTTAAGAAGAAGGAGAAAACTGAAAATATAATCAAGgttttttctt ... aatgttgcagAAAACAAAACAGAACCG
ttgttttacattccagtactttagttgatgctaatccacccaagcaatgttgcagAAAACAAAACAGAACCGCCAGAAGAAGAAACAGAACAAGGATGACAAGAATTCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCA
tgctaat putative branch site (score: 2)
ttacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttttcttctctatcaattgttctagtccttttgttttacattccagtactttagttgatgctaatccacccaagcaatgttgcagAAAACAAAACAGAACCGCCAGAAGAAGAAACAGAACAAGGATGACAAGAATTCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCATTCATCTTATTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC