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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggactaaatacttctacaagaagtaatgcataatgctgttttattgttctggcaaaattagttttgattgtgtctgtgaagtagtttgatttcccatttttttttgtttctagGCTCATCGTGCTGCATGCCTGTTGAGGAAAATTCTGCAAGTAATTCAGTTGCGCTTTTCAAATCAAGCAGAAAGCATGAAAAAT

Basic information

species Glycine max
transcript GLYMA08G01800.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207782310|gb|GD752845.1|GD752845
EST:     TGATATCTTTGAAAGGAAAAATGGAGATGTACCTCAG                         GCTCATCGTGCTGCATGCCTGTTGAGGAAAATTCTGCAAGTAATTCAGTTG
genomic: TGATATCTTTGAAAGGAAAAATGGAGATGTACCTCAGgtaagtggac ... ttgtttctagGCTCATCGTGCTGCATGCCTGTTGAGGAAAATTCTGCAAGTAATTCAGTTG
EST: gi|193406321|gb|FK373516.1|FK373516
EST:     ATAGGATCCTAAGTGATATCTTTGAAAGGAGAAATGGAGATGTACCTCAG                         GCTCATCGTGCTGCATGCCTGTTGAGGAAAATTCTGCAAGTAATTCAGTTG
genomic: ATAGGATCCTAAGTGATATCTTTGAAAGGAAAAATGGAGATGTACCTCAGgtaagtggac ... ttgtttctagGCTCATCGTGCTGCATGCCTGTTGAGGAAAATTCTGCAAGTAATTCAGTTG
EST: gi|208298630|gb|GE094153.1|GE094153
EST:     ATAGGATTCTGAGTGATATCTTTGAAAGGAAAAATGGAGATGTACCTCAG                         GCTCATCGTGCTGCATGCCTGTTGAGGAAAATTCTGCAAGTAATTCAGTTG
genomic: ATAGGATCCTAAGTGATATCTTTGAAAGGAAAAATGGAGATGTACCTCAGgtaagtggac ... ttgtttctagGCTCATCGTGCTGCATGCCTGTTGAGGAAAATTCTGCAAGTAATTCAGTTG
EST: gi|207811204|gb|GD783041.1|GD783041
EST:     ATAGGATCCTAAGTGATATCTTTGAAAGGAAAAATGGAGATGTACCTCAG                         GCTCATCGTGCTGCATGCCTGTTGAGGAAAATTCTGCAAGTAATTCAGTTG
genomic: ATAGGATCCTAAGTGATATCTTTGAAAGGAAAAATGGAGATGTACCTCAGgtaagtggac ... ttgtttctagGCTCATCGTGCTGCATGCCTGTTGAGGAAAATTCTGCAAGTAATTCAGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttttgattgtgtctgtgaagtagtttgatttcccatttttttttgtttctagGCTCATCGTGCTGCATGCCTGTTGAGGAAAATTCTGCAAGTAATTCAGTTGCGCTTTTCAAATCAAGCAGAAAGCATGAAAAAT
                          tttgatttcccatttt  CT-rich tract
                                     atttttttttgtttct  TA-rich tract