1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atctgatacatttgtttcagaaaattagtagtgagctgaaccctaaaattccacttacaaaagattgaaatgcatatggttaacgcattctatcttatagGGGTTCTCAACAGGTTTGCCAGAGAGACTACAATTACCTTTGCTGAGAACTTTACCTGGACTTGAGAACTGTTCAATGTTAAGGCCTGCATATGCTGTGG
species | Glycine max |
transcript | GLYMA08G00380.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAATATTTCTTGAACCTGAGGGTCGAAATGTGCCTGAGCTCTATGTGCAG GGGTTCTCAACAGGTTTGCCAGAGAGACTACAATTACCTTTGCTGAGAACTEST: gi|193343830|gb|FK313186.1|FK313186
genomic: AAATATTTCTTGAACCTGAGGGTCGAAATGTGCCTGAGCTCTATGTGCAGgtaagttata ... tatcttatagGGGTTCTCAACAGGTTTGCCAGAGAGACTACAATTACCTTTGCTGAGAACT
EST: AAATATTTCTTGAACCTGAGGGTCGAAATGTGCCTGAGCTCTATGTGCAG GGGTTCTCAACAGGTTEST: gi|16996254|gb|BM085626.1|BM085626
genomic: AAATATTTCTTGAACCTGAGGGTCGAAATGTGCCTGAGCTCTATGTGCAGgtaagttata ... tatcttatagGGGTTCTCAACAGGTT
EST: AAATATTTCTTGAACCTGAGGGTCGAAATGTGCCTGAGCTCTATGTGCAG GGGTTCTCAACAGGTTTGCCAGAGAGACTACAATTACCTTTGCTGAGAACT
genomic: AAATATTTCTTGAACCTGAGGGTCGAAATGTGCCTGAGCTCTATGTGCAGgtaagttata ... tatcttatagGGGTTCTCAACAGGTTTGCCAGAGAGACTACAATTACCTTTGCTGAGAACT
aaattccacttacaaaagattgaaatgcatatggttaacgcattctatcttatagGGGTTCTCAACAGGTTTGCCAGAGAGACTACAATTACCTTTGCTGAGAACTTTACCTGGACTTGAGAACTGTTCAATGTTAAGGCCTGCATATGCTGTGG
ttctatctt CT-rich tract
tatcttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctgatacatttgtttcagaaaattagtagtgagctgaaccctaaaattccacttacaaaagattgaaatgcatatggttaacgcattctatcttatagGGGTTCTCAACAGGTTTGCCAGAGAGACTACAATTACCTTTGCTGAGAACTTTACCTGGACTTGAGAACTGTTCAATGTTAAGGCCTGCATATGCTGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- ctgatac
- - - - - - - - - - - - - - - - -agctgaa
- - - - - - - - - - - - - - - - - - - - ccctaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcattc