1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...cccaagcccaatgaatgttttctttttgactccttttaaacattagttgaatctaggattcataattttgttctgctctgcaatgtatgtcgtttttcagGATTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCTCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCG
species | Glycine max |
transcript | GLYMA07G39870.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTTGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAG GATTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCTCAAAATGCTEST: gi|27427305|gb|CA938825.1|CA938825
genomic: CTTGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAGgtagtgttcc ... cgtttttcagGATTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCTCAAAATGCT
EST: CTTGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAG GATTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCTCAAAATGCTEST: gi|192299493|gb|FG990802.1|FG990802
genomic: CTTGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAGgtagtgttcc ... cgtttttcagGATTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCTCAAAATGCT
EST: CTTGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAG GATTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCEST: gi|151402278|gb|EV272091.1|EV272091
genomic: CTTGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAGgtagtgttcc ... cgtttttcagGATTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGC
EST: CTTGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAG GATTCTTATGCCATTCGAAGCTTTGAGAGAGGA-TATCTGCTCAAAEST: gi|254317259|gb|GR826204.1|GR826204
genomic: CTTGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAGgtagtgttcc ... cgtttttcagGATTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCTCAAA
EST: CTTGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAG GATTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCTCAAAATGCT
genomic: CTTGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAGgtagtgttcc ... cgtttttcagGATTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCTCAAAATGCT
gttgaatctaggattcataattttgttctgctctgcaatgtatgtcgtttttcagGATTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCTCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCG
tcgtttttc CT-rich tract
attcataattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccaagcccaatgaatgttttctttttgactccttttaaacattagttgaatctaggattcataattttgttctgctctgcaatgtatgtcgtttttcagGATTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCTCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT