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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgatttgaaatgcatatttttcagctttccccttttggattatatgttgcatgcttgcatagtctgacctagtcctctttttatttgaatttaatgcagATATATGCAGAAATGATTGGCAATGTTATGATAGATGCTCGATCAACTGGAAAATATTACCATT

Basic information

species Glycine max
transcript GLYMA07G39380.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G39380.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G059151_T01 (Zea mays), 3'ss of exon 6
----------------------------------------------------------------------------atgatttgaaatgcatatttttcagctttcccc---ttttggatta---tatgttgcatgcttgcat-----agtctgacctagtcctctttttatttgaatttaa----tgcagATATATGCAGAAATGATTGGCAATGTTATGATAGATGCTCGATCAACTGGAAAATATTACCATT
                                                                            ||   |       ||  |  |  ||| |||      |||   ||||    ||  | ||    |||||     |  |   | |     | |  | |   | | | |     | ||||||||  | ||||||||||||||||||||||  |||||  |||| ||||||||||| ||||| |
gtatctaattcttgattgttgactatgtatgaagtctcagtctaggtttttaattagctacaatggtgatgggctaattgctcaccgcacacctgctcgagcattctttcaatttgaaattaaggcattctacacagatgcatttgaaaacccatcatgaatatatcatgacaaggaatcatatttttcagATATACTCTGAAATGATTGGCAATGTTATGACTGATGCGAGATCCACTGGAAAATACTACCACT

upper sequence: GLYMA07G39380.1 (Glycine max), 3'ss of exon 6
lower sequence: AT4G04040.1 (Arabidopsis thaliana), 3'ss of exon 6
atgatttgaaatgcatatttttcagctttccccttttggattatatgttgcatgcttgcatagtctgacctagtcctctttttatttgaatttaatgcagATATATGCAGAAATGATTGGCAATGTTATGATAGATGCTCGATCAACTGGAAAATATTACCATT
           |   ||  ||| |  |||   | |     |||   ||||  |  ||  | |    |||||  |||  ||| |  ||  ||  | || |||||||  ||||||||||||| ||||||||||| ||||| || || || |||||||| || || |
----------gtaagtaactttaaaatttatgcat--aactta---gttgtctttttatagaa---gacct--tccattttgtgattatataca-tgtagATATACTCAGAAATGATTGGAAATGTTATGATCGATGCGCGTTCCACGGGAAAATACTATCACT

upper sequence: GLYMA07G39380.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv10s0116g00360.t01 (Vitis vinifera), 3'ss of exon 6
atgatttgaaatgcatatttttcagctttccccttttggattatatgttgcatgcttgcatagtc---tgacctagtcctctttttatttgaatttaatgcagATATATGCAGAAATGATTGGCAATGTTATGATAGATGCTCGATCAACTGGAAAATATTACCATT
|| ||   |  ||  || |  |     | || ||| ||| |    |  |   |  |||||| ||    | | | |       || |||||  |   | ||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || || |
atcatcc-atgtgactaatggttgaaatgcctcttatggttgcagtagtaagt-tttgcattgtaaaataatcaatggtatgttgtatttttaacca-tgcagATTTATGCAGAAATGATTGGGAATGTCATGATAGATGCTCGCTCAACTGGAAAATACTATCACT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7591049|gb|AW706790.1|AW706790
EST:     TGAAATGCAAAGAAGTTCCCACAAGTTTTGGGTTTGATACAGCATGCAAG                         ATATATGCAGAAATGATTGGCAATGTTATGATAGATGCTCGATCAACTGGA
genomic: TGAAATGCAAAGAAGTTCCCACAAGTTTTGGGTTTGATACAGCATGCAAGgtgaatgaag ... tttaatgcagATATATGCAGAAATGATTGGCAATGTTATGATAGATGCTCGATCAACTGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgcatgcttgcatagtctgacctagtcctctttttatttgaatttaatgcagATATATGCAGAAATGATTGGCAATGTTATGATAGATGCTCGATCAACTGGAAAATATTACCATT
                               tctttttatttgaatt  TA-rich tract