1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcccagaggacttaattagatggggtactcaggaaagatatatagatgtattcacatttggttgtggcaattcctgatgtttatcattgatgtctaccagGCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGATGTAAGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGA
species | Glycine max |
transcript | GLYMA07G37640.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTATCTGGACTCACTAAGAGGAACAGATGCCCAAGTAATGAAAGTTCTG GCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGATEST: gi|208078078|gb|GD875694.1|GD875694
genomic: AGTATCTGGACTCACTAAGAGGAACAGATGCCCAAGTAATGAAAGTTCTGgtaatgtttt ... tgtctaccagGCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGAT
EST: AGTATCTGGACTCACTAAGAGGAACAGATGCCCAAGTAATGAAAGTTCTG GCTAGCTATATTGTAGATGAAGTAAAGGEST: gi|23735206|gb|BU765872.1|BU765872
genomic: AGTATCTGGACTCACTAAGAGGAACAGATGCCCAAGTAATGAAAGTTCTGgtaatgtttt ... tgtctaccagGCTAGCTATATTGTAGATGAAGTAAAGG
EST: AGTATCTGGACTCACTAAGAGGAACAGATGCCCAAGTAATGAATTTTCTG GCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGATEST: gi|208111814|gb|GD913312.1|GD913312
genomic: AGTATCTGGACTCACTAAGAGGAACAGATGCCCAAGTAATGAAAGTTCTGgtaatgtttt ... tgtctaccagGCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGAT
EST: AGTATCTGGACTCACTAAGAGGAACAGATGCCCAAGTAATGAAAGTTCTG GCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGATEST: gi|207709321|gb|GD689571.1|GD689571
genomic: AGTATCTGGACTCACTAAGAGGAACAGATGCCCAAGTAATGAAAGTTCTGgtaatgtttt ... tgtctaccagGCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGAT
EST: AGTATCTGGACTCACTAAGAGGAACAGATGCCCAAGTAATGAAAGTTCTG GCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGATEST: gi|208192712|gb|GD987565.1|GD987565
genomic: AGTATCTGGACTCACTAAGAGGAACAGATGCCCAAGTAATGAAAGTTCTGgtaatgtttt ... tgtctaccagGCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGAT
EST: AGTATCTGGACTCACTAAGAGGAACAGATGCCCAAGTAATGAAAGTTCTG GCTAGCTATAATTAAGTAAAGATGAAGTAAAGGACAAGACTGGAAAAGATA
genomic: AGTATCTGGACTCACTAAGAGGAACAGATGCCCAAGTAATGAAAGTTCTGgtaatgtttt ... tgtctaccagGCTAGCTATA-TT--GTA--GATGAAGTAAAGGACAAGACTGGAAAAGATA
atgtattcacatttggttgtggcaattcctgatgtttatcattgatgtctaccagGCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGATGTAAGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGA
tttatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcccagaggacttaattagatggggtactcaggaaagatatatagatgtattcacatttggttgtggcaattcctgatgtttatcattgatgtctaccagGCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGATGTAAGTTCTTGGAAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG