Sequence
atgc intronic sequence ATGC exonic sequencegtaacaatatcttgtaatttcttgatataattttattatttggctactatgacatgctacagtcctcatgtttattgtatagATCACGCCCGCAAGGGATGGGAAACCTGTCTTGATTGAACTTATTGATGCAAAAACAAAGGAGCCAAAAGACACTCTGGAG
Basic information
species | Glycine max |
transcript | GLYMA07G37050.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G37050.2 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 3'ss of exon 6
-gtaacaatatcttgtaa------tttcttgatataattttattatttggctactatgacatgctacagtcctcatgtttattgtatagATCACGCCCGCAAGGGATGGGAAACCTGTCTTGATTGAACTTATTGATGCAAAAACAAAGGAGCCAAAAGACACTCTGGAG
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gttaactagaccttctaccttagctttcttcataccgcagacacatttcatcatctc--tatgttaaaattgttgatgattttttctagATTACTCCAGCAAAGGATGGAAAACCTGTGCAGATTGAGCTCATTGATGCAAAAACAAAGGAACACAAAGAAACCCTCGAG
upper sequence: GLYMA07G37050.2 (Glycine max), 3'ss of exon 6
lower sequence: AT4G16155.1 (Arabidopsis thaliana), 3'ss of exon 6
----gtaacaatatcttgtaatttcttgat---ataattttattatttggctactatgacatgctacagtcctcatgtttattgtatagATCACGCCCGCAAGGGATGGGAAACCTGTCTTGATTGAACTTATTGATGCAAAAACAAAGGAGCCAAAAGACACTCTGGAG
| | ||| | || | || ||| || ||| | | | | | | | | | || || || ||||||| || |||| |||||||||||| || |||||||||| |||||||| ||||| ||||| || || || ||| |||||
gtaagcctttttgtctcatgcattttaaattagatatcttccttacacagtgggtttacgaattttttttgttaacgcttctt-tacagATCACTCCAGCAAAGGATGGGAAACCAGTGCTGATTGAACTAATTGATGCCAAAACCAAGGAACCCAAGGATACTTTGGAG
upper sequence: GLYMA07G37050.2 (Glycine max), 3'ss of exon 6
lower sequence: AT3G16950.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaacaatatcttgtaatttcttg-atataattttattatttggctactatgacatgctacagtcctcatgt----------------ttattgtatagATCACGCCCGCAAGGGATGGGAAACCTGTCTTGATTGAACTTATTGATGCAAAAACAAAGGAGCCAAAAGACACTCTGGAG
|| | | | | | || ||| | ||| | | | ||| ||| || || || |||| | || || | |||| || || ||||||||||||||||| || ||||||| ||||||||||| ||||| ||||| || || || ||| |||||
gtgagcctgttatatcatgcattgcaaatactgcttctctttctcta-tacagtgtgtccatgtattcatctgttaaacttaaatctattcttattcagATTACTCCGGCAAGGGATGGGAAACCAGTTCTGATTGAGCTTATTGATGCCAAAACCAAGGAACCTAAGGATACTTTGGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taattttattatttggctactatgacatgctacagtcctcatgtttattgtatagATCACGCCCGCAAGGGATGGGAAACCTGTCTTGATTGAACTTATTGATGCAAAAACAAAGGAGCCAAAAGACACTCTGGAG
atgtttattgtata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacaatatcttgtaatttcttgatataattttattatttggctactatgacatgctacagtcctcatgtttattgtatagATCACGCCCGCAAGGGATGGGAAACCTGTCTTGATTGAACTTATTGATGCAAAAACAAAGGAGCCAAAAGACACTCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG