1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...cactgtatgtaggatttatgatccaacttgtgcttctcttctttggatgttctgacattttacctggactaaaatctttttatttggttttacttgacagGCAATCTCTGTCATGGCCAAGACTGGGTTTGCAGAACTGATTGATTTCAACCCAATTCGTGCAACAGATGTGCAACTTCCTGCTGGTGGGACTTTTGTGA
species | Glycine max |
transcript | GLYMA07G36610.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATGTGATTGTGAACGACATATTGGGACTCAATCTGGTGGGATGGATCAG GCAATCTCTGTCATGGCCAAGACTGGGTTTGCAGAACTGATTGATTTCAACEST: gi|7146072|gb|AW507994.1|AW507994
genomic: CATGTGATTGTGAACGACATATTGGGACTCAATCTGGTGGGATGGATCAGgttgtgtaca ... tacttgacagGCAATCTCTGTCATGGCCAAGACTGGGTTTGCAGAACTGATTGATTTCAAC
EST: CATGTGATTGTGAACGACATATTGGGACTCAATCTGGTGGGATGGATCAG GCAATCTCTGTCATGGCCAAGACTGGGTTTGCAGAACTGATTGATTTCAACEST: gi|193570621|gb|FK522346.1|FK522346
genomic: CATGTGATTGTGAACGACATATTGGGACTCAATCTGGTGGGATGGATCAGgttgtgtaca ... tacttgacagGCAATCTCTGTCATGGCCAAGACTGGGTTTGCAGAACTGATTGATTTCAAC
EST: CATGTGATTGTGAACGACATATTGGGACTCAATCTGGTGGGATGGATCAG GCAATCTCTGTCATGGCCAAGACTGGGTTTGCAGAACTGATTGATTTCAACEST: gi|208318501|gb|GE110730.1|GE110730
genomic: CATGTGATTGTGAACGACATATTGGGACTCAATCTGGTGGGATGGATCAGgttgtgtaca ... tacttgacagGCAATCTCTGTCATGGCCAAGACTGGGTTTGCAGAACTGATTGATTTCAAC
EST: CATGTGATTGTGAACGACATATTGGGACTCAATCTGGTGGGATGGATCAG GCAATCTCTGTCATGGCCAAGACTGGGTTTGCAGAACTGATTGATTTCAAC
genomic: CATGTGATTGTGAACGACATATTGGGACTCAATCTGGTGGGATGGATCAGgttgtgtaca ... tacttgacagGCAATCTCTGTCATGGCCAAGACTGGGTTTGCAGAACTGATTGATTTCAAC
gatgttctgacattttacctggactaaaatctttttatttggttttacttgacagGCAATCTCTGTCATGGCCAAGACTGGGTTTGCAGAACTGATTGATTTCAACCCAATTCGTGCAACAGATGTGCAACTTCCTGCTGGTGGGACTTTTGTGA
gactaaa putative branch site (score: 2)
ttttactt putative PPT
taaaatctttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactgtatgtaggatttatgatccaacttgtgcttctcttctttggatgttctgacattttacctggactaaaatctttttatttggttttacttgacagGCAATCTCTGTCATGGCCAAGACTGGGTTTGCAGAACTGATTGATTTCAACCCAATTCGTGCAACAGATGTGCAACTTCCTGCTGGTGGGACTTTTGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- -tgtatgt
- - - - - - - - - - -tccaact
- - - - - - - - - - - - - - - -gcttctc
- - - - - - - - - - - - - - - - - - - - - - - - -ttctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctggac