1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgatgatacccatataggcctgatcatttaaattttttctgcaatctgagacatagaaatgtatttcatatctattgactgagtagtttggtttgattagTCTGATACTGCAAGTGTAAAAGTTCCTGAACTTGACTTGGAGCTGGCAAGCGGAACCCTTGGAGGAATTGTTACTACTGTTGAAGGTTTAATTACAAAAA
species | Glycine max |
transcript | GLYMA07G34890.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTACTCTTAATGTGAAGAATGTTAATGACCTGAGCCGTGATGTAATAAAG TCTGATACTGCAAGTGTAAAAGTTCCTGAACTTGACTTGGAGCTGGCAAGCEST: gi|151399172|gb|EV269043.1|EV269043
genomic: TTACTCTTAATGTGAAGAATGTTAATGACCTGAGCCGTGATGTAATAAAGgtctgtaatt ... gtttgattagTCTGATACTGCAAGTGTAAAAGTTCCTGAACTTGACTTGGAGCTGGCAAGC
EST: TTACTCTTAATGTGAAGAATGTTAATGACCTGAGCCGTGATGTAATAAAG TCTGATACTGCAAGTGTAAAAGTTCCTGAACTTGACTTGGAGCTGGCAAGC
genomic: TTACTCTTAATGTGAAGAATGTTAATGACCTGAGCCGTGATGTAATAAAGgtctgtaatt ... gtttgattagTCTGATACTGCAAGTGTAAAAGTTCCTGAACTTGACTTGGAGCTGGCAAGC
ctgagacatagaaatgtatttcatatctattgactgagtagtttggtttgattagTCTGATACTGCAAGTGTAAAAGTTCCTGAACTTGACTTGGAGCTGGCAAGCGGAACCCTTGGAGGAATTGTTACTACTGTTGAAGGTTTAATTACAAAAA
tattgac putative branch site (score: 2)
aaatgtatttcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatgatacccatataggcctgatcatttaaattttttctgcaatctgagacatagaaatgtatttcatatctattgactgagtagtttggtttgattagTCTGATACTGCAAGTGTAAAAGTTCCTGAACTTGACTTGGAGCTGGCAAGCGGAACCCTTGGAGGAATTGTTACTACTGTTGAAGGTTTAATTACAAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG