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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaccccaaatactttaagatagtccattttgtatgtgttgtgtttctttttattgtatgtcatttatatttgaactattattttaaattattgcagGGGTGGAGGGAACTTTGCCCGTAGATCCCTGGTATATTGGTGGTCCTGTTGTCAAGGGATTTGGTCGTGGCTCAAAGGTACTTGGGATCCCTACAG

Basic information

species Glycine max
transcript GLYMA07G30970.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G30970.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s0181g00140.t01 (Vitis vinifera), 3'ss of exon 7
gtaaacccc--aaatactt--taagatagtc-cattttgtatgtgttgtgtttctttttattgtatgtcatttatatttgaactattattttaaattattgcagGGGTGGAGGGAACTTTGCCCGTAGATCCCTGGTATATTGGTGGTCCTGTTGTCAAGGGATTTGGTCGTGGCTCAAAGGTACTTGGGATCCCTACAG
||||||| |  | ||||||  ||  ||| || ||     |   |  |  | |||| ||  |  ||  | ||||  || |||||||||  |||  |  | ||||||||| ||||  || || || ||||| || |||||||| ||||| |||||  | ||||||||||||||||| ||||||||||||||  |||| ||||
gtaaacctctcagatacttcttatcatattctcaaacatttcctagtaaggttctcttggtattac-ttattttcatctgaactattgatttgta--actgcagGGGTCGAGGATACCTTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCATTAAGGGATTTGGTCGTGGGTCAAAGGTACTTGGAGTCCCAACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6718628|gb|AW306275.1|AW306275
EST:     CTCCATTTGAAGATT                         GGGTGGAGGGAACTTTGCCCGTAGATCCCTGGTATATTGGTGGTCCTGTTG
genomic: CTCCATTTGAAGATTgtaaacccca ... attattgcagGGGTGGAGGGAACTTTGCCCGTAGATCCCTGGTATATTGGTGGTCCTGTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttctttttattgtatgtcatttatatttgaactattattttaaattattgcagGGGTGGAGGGAACTTTGCCCGTAGATCCCTGGTATATTGGTGGTCCTGTTGTCAAGGGATTTGGTCGTGGCTCAAAGGTACTTGGGATCCCTACAG
     tttttattgtatgtca  TA-rich tract