1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcattatgcaagctcaccatttacatatatagattaaggaagctctcttttcacttcactatattatatgctatatgtgatgcctttttacctgttgcagTTTCACTAATGCCTTGGCTGGACTGGCTGCTAATGATATACATCAGAGAACTACTGCAAGATTGGAATCGCTTCATTCTGAGGGAGTTCAT
species | Glycine max |
transcript | GLYMA07G29660.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGAATTTACACGATTCTAGTGTTGGCAAGGCTGCTGAAATGGCCGCAGG TTTCACTAATGCCTTGGCTGGACTGGCTGCTAATGATATACATCAGAGAACEST: gi|15203121|gb|BI425889.1|BI425889
genomic: AAGAATTTACACGATTCTAGTGTTGGCAAGGCTGCTGAAATGGCCGCAGGgtaatttaac ... cctgttgcagTTTCACTAATGCCTTGGCTGGACTGGCTGCTAATGATATACATCAGAGAAC
EST: AATATTTTACACGATTCTAGTGTTGGCAAGGCTGCTGAAATGGCCGCAGG TTTCACTAATGCCTTGGCTGGACTGGCTGCTAATGATATACATCAGAGAAC
genomic: AAGAATTTACACGATTCTAGTGTTGGCAAGGCTGCTGAAATGGCCGCAGGgtaatttaac ... cctgttgcagTTTCACTAATGCCTTGGCTGGACTGGCTGCTAATGATATACATCAGAGAAC
tcttttcacttcactatattatatgctatatgtgatgcctttttacctgttgcagTTTCACTAATGCCTTGGCTGGACTGGCTGCTAATGATATACATCAGAGAACTACTGCAAGATTGGAATCGCTTCATTCTGAGGGAGTTCAT
cctttttacctgtt CT-rich tract
tatattatatgctata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattatgcaagctcaccatttacatatatagattaaggaagctctcttttcacttcactatattatatgctatatgtgatgcctttttacctgttgcagTTTCACTAATGCCTTGGCTGGACTGGCTGCTAATGATATACATCAGAGAACTACTGCAAGATTGGAATCGCTTCATTCTGAGGGAGTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - tgcaagc
- - - - - - -tcaccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgcc