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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataactgatttagtatttatgcaaaatctgcctctgtgaagaatgaacatgaaccatattgtggcttctccagGTTGCCTTAAGCATGCTAAGGGAGGAAGGATTTGCATCTTTCTATCGTGGCCTTGGGCCTTCTCTAATTGCAATAGCTCCTTATATTGCAGTGAACTTTT

Basic information

species Glycine max
transcript GLYMA07G18140.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G18140.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0007g02230.t01 (Vitis vinifera), 3'ss of exon 6
----gtataactgatttag----tatttatgcaaaatctgcctctgtgaagaatgaacatgaaccatattgtggcttctccagGTTGCCTTAAGCATGCTAAGGGAGGAAGGATTTGCATCTTTCTATCGTGGCCTTGGGCCTTCTCTAATTGCAATAGCTCCTTATATTGCAGTGAACTTTT
    |   |||||||| ||    | ||||||  ||    |||| ||| | |  |||| ||| |   |  || |     | ||||||||||||| ||| ||||| ||||||||| ||||||| ||||||   || ||||| ||||||||  ||| |||||| ||||| ||||| ||||||||||
gtatgatcaactgattcagattgtgtttatggcaagaaggcct-tgttatg--tgaagatgcat--ttatgagctgatttcagGTTGCCTTAAACATACTAAGAGAGGAAGGAGTTGCATCCTTCTATAAGGGTCTTGGACCTTCTCTTCTTGGAATAGCACCTTACATTGCTGTGAACTTTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcaaaatctgcctctgtgaagaatgaacatgaaccatattgtggcttctccagGTTGCCTTAAGCATGCTAAGGGAGGAAGGATTTGCATCTTTCTATCGTGGCCTTGGGCCTTCTCTAATTGCAATAGCTCCTTATATTGCAGTGAACTTTT
                                              cttctcc  CT-rich tract
                                     atattgt  TA-rich tract