1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgtctattttgtatgaacttgttaaacaagaaactatgttgtcagtgggtatcatttcattgatcgcatctaattggctatggaatgtaatgatttgcagGGACCTTTTGCCTTTTATATGGGGTTCATACCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTTTAACTCTAGAACAG
species | Glycine max |
transcript | GLYMA07G17380.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
tgggtatcatttcattgatcgcatctaattggctatggaatgtaatgatttgcagGGACCTTTTGCCTTTTATATGGGGTTCATACCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTTTAACTCTAGAACAG
atctaat putative branch site (score: 3)
taatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtctattttgtatgaacttgttaaacaagaaactatgttgtcagtgggtatcatttcattgatcgcatctaattggctatggaatgtaatgatttgcagGGACCTTTTGCCTTTTATATGGGGTTCATACCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTTTAACTCTAGAACAG
- - - - - -tatgaac
- - - - - - - - - - - - -acaagaaa
- - - - - - - - - - - - - - - - - - tgttgtc
- - - - - - - - - - - - - - - - - - - - - - gtgggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgta