Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggtttatagtttgtatgccatttgtcttgatacttcgtaaggattgcttgcaagtttataattttgaccttctaaaagttggtttcttaattaaatgcatgtgtacttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACCCAAGGTTCAGAAGGGAACAAGATGACCTCTTTATTGATCAAAATCTCA

Basic information

species Glycine max
transcript GLYMA07G14540.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22521806|gb|BU080617.1|BU080617
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|208303944|gb|GE105677.1|GE105677
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTT-GAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGAT
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGAT
EST: gi|298173661|gb|HO016997.1|HO016997
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATA
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATA
EST: gi|254327987|gb|GR834952.1|GR834952
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|33388612|gb|CA851819.1|CA851819
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|7925973|gb|AW831999.1|AW831999
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|22524464|gb|BU083275.1|BU083275
EST:     ATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: ATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|192328757|gb|FK022543.1|FK022543
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|298194584|gb|HO043056.1|HO043056
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|192319147|gb|FK010655.1|FK010655
EST:     GAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|58023827|gb|CX710568.1|CX710568
EST:     GTATGCAGCAGGGTCAGAAGA-TGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|120491272|gb|EH219439.1|EH219439
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTTGTATTGGCA-GTNNAAG-AT
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTT-GTATTG-CAAGTA-AAGGAT
EST: gi|13479325|gb|BG508668.1|BG508668
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|5770887|gb|AI974061.1|AI974061
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|298195828|gb|HO044219.1|HO044219
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|254327121|gb|GR836730.1|GR836730
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|19453018|gb|BM954428.1|BM954428
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|11687347|gb|BF594987.1|BF594987
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|207678496|gb|GD661034.1|GD661034
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTT-GAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTTATTGTCAAGTAAA
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGT-ATTG-CAAGTAAA
EST: gi|22524662|gb|BU083473.1|BU083473
EST:     ATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: ATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|208323895|gb|GE124398.1|GE124398
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|298179173|gb|HO027644.1|HO027644
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|298195498|gb|HO043889.1|HO043889
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|193680706|gb|FK624052.1|FK624052
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|298186346|gb|HO036979.1|HO036979
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCC                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|208324992|gb|GE124876.1|GE124876
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGAT
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGAT
EST: gi|208335448|gb|GE137509.1|GE137509
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|192322850|gb|FK014781.1|FK014781
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAA-GGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|18732460|gb|BM527057.1|BM527057
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|254327988|gb|GR834953.1|GR834953
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         -CTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|208315209|gb|GE116113.1|GE116113
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|6724797|gb|AW309196.1|AW309196
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|26058372|gb|CA801286.1|CA801286
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|193500227|gb|FK465256.1|FK465256
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: gi|208159029|gb|GD951754.1|GD951754
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGAT
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGAT
EST: gi|16996472|gb|BM085844.1|BM085844
EST:     GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT                         CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgaccttctaaaagttggtttcttaattaaatgcatgtgtacttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACCCAAGGTTCAGAAGGGAACAAGATGACCTCTTTATTGATCAAAATCTCA
                      tttcttaattaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtggtttatagtttgtatgccatttgtcttgatacttcgtaaggattgcttgcaagtttataattttgaccttctaaaagttggtttcttaattaaatgcatgtgtacttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACCCAAGGTTCAGAAGGGAACAAGATGACCTCTTTATTGATCAAAATCTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG